Variant report

Variant	rs1568609
Chromosome Location	chr3:157066839-157066840
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156876462..156878944-chr3:157065640..157068147,2	K562	blood:

Variant related genes	Relation type
ENSG00000163660	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1027603	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.98[ASN][1000 genomes]
rs10936085	0.94[CHB][hapmap];0.85[YRI][hapmap]
rs10936086	0.88[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs10936087	0.95[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs12486427	0.95[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs12492874	0.82[EUR][1000 genomes]
rs12492929	0.83[EUR][1000 genomes]
rs12496879	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12629552	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12636038	0.82[EUR][1000 genomes]
rs12638732	0.95[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs13087207	0.83[EUR][1000 genomes]
rs1456097	0.95[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs1456105	0.82[EUR][1000 genomes]
rs1456106	0.82[EUR][1000 genomes]
rs1456108	0.95[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs1500916	0.95[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1500919	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1500920	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1545596	0.95[CEU][hapmap];0.83[CHB][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs1546261	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1563420	0.95[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs1568612	0.94[CHB][hapmap];0.83[JPT][hapmap]
rs1585080	0.95[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes]
rs1824058	0.95[CEU][hapmap];0.91[JPT][hapmap]
rs1840668	0.95[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes]
rs1840673	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs1869859	0.95[CEU][hapmap];0.83[CHB][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs1965246	0.95[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes]
rs2047649	0.95[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2085315	0.82[EUR][1000 genomes]
rs2088815	0.88[CHB][hapmap]
rs2124497	0.83[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs2168430	0.95[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs2168431	0.83[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs2305620	0.95[CEU][hapmap];0.91[JPT][hapmap]
rs2305622	0.82[EUR][1000 genomes]
rs35004310	0.82[EUR][1000 genomes]
rs3816527	0.81[JPT][hapmap]
rs3816528	0.95[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap]
rs4435581	0.83[EUR][1000 genomes]
rs4640512	0.95[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs4679793	0.95[CEU][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs4680351	0.94[CHB][hapmap];0.97[GIH][hapmap];0.83[JPT][hapmap]
rs4680358	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680359	0.94[CHB][hapmap];0.85[YRI][hapmap]
rs4680360	0.91[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.81[MEX][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes]
rs4680367	0.81[JPT][hapmap]
rs6441121	0.89[CHB][hapmap]
rs6441124	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6441126	0.82[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs6441127	0.84[EUR][1000 genomes]
rs6441128	0.95[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs6441129	0.95[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap]
rs6776647	0.94[CHB][hapmap];0.97[GIH][hapmap];0.83[JPT][hapmap]
rs6780399	0.96[ASN][1000 genomes]
rs6801110	0.95[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6803628	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs722484	0.83[EUR][1000 genomes]
rs7614339	0.93[CHB][hapmap];0.83[JPT][hapmap]
rs7617727	0.95[CEU][hapmap];0.88[CHB][hapmap];0.81[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs7618737	0.84[EUR][1000 genomes]
rs7623173	0.95[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs7626884	0.81[JPT][hapmap]
rs7629293	0.82[EUR][1000 genomes]
rs7631556	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7639254	0.91[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap]
rs885094	0.96[ASN][1000 genomes]
rs924517	0.89[CHB][hapmap]
rs9857875	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9867618	0.89[CHB][hapmap]
rs9871290	0.95[CEU][hapmap];0.88[CHB][hapmap];0.81[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap];0.82[TSI][hapmap];0.82[EUR][1000 genomes]
rs9878474	0.95[CEU][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs9883103	0.84[CHB][hapmap];0.86[LWK][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs9883822	0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs988587	0.95[CEU][hapmap];0.94[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs988588	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9990136	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1568609	SSR3	cis	cerebellum	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157056200-157072600	Weak transcription	HUVEC	blood vessel
2	chr3:157057000-157072800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:157065600-157068400	Enhancers	Osteobl	bone
4	chr3:157065800-157067000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:157066000-157073200	Weak transcription	HSMM	muscle
6	chr3:157066000-157076400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:157066000-157086800	Weak transcription	Pancreas	Pancrea
8	chr3:157066200-157067600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:157066400-157068000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:157066600-157071200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:157066600-157076000	Weak transcription	NH-A	brain
12	chr3:157066600-157083200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:157066800-157068000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr3:157066800-157070400	Weak transcription	NHDF-Ad	bronchial
15	chr3:157066800-157072200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:157066800-157074000	Weak transcription	NHLF	lung

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