Variant report

Variant	rs9857875
Chromosome Location	chr3:157078897-157078898
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:157073593..157075630-chr3:157078223..157080288,2	K562	blood:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1027603	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10936085	1.00[CHB][hapmap]
rs10936086	0.94[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes]
rs10936087	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes]
rs12486427	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes]
rs12492874	0.83[EUR][1000 genomes]
rs12492929	0.84[EUR][1000 genomes]
rs12496879	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12629552	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12636038	0.83[EUR][1000 genomes]
rs12638732	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes]
rs13087207	0.84[EUR][1000 genomes]
rs1456097	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes]
rs1456105	0.83[EUR][1000 genomes]
rs1456106	0.83[EUR][1000 genomes]
rs1456108	1.00[CEU][hapmap];0.87[CHB][hapmap];0.92[JPT][hapmap];0.83[EUR][1000 genomes]
rs1456110	0.83[CEU][hapmap]
rs1500916	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1500919	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1500920	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1545596	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes]
rs1546261	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1563420	1.00[CEU][hapmap];0.87[CHB][hapmap];0.92[JPT][hapmap];0.83[EUR][1000 genomes]
rs1568609	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1568612	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs1585080	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs1824058	1.00[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap]
rs1840668	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes]
rs1840673	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes]
rs1869857	0.83[CEU][hapmap]
rs1869859	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes]
rs1965246	1.00[CEU][hapmap];0.87[CHB][hapmap];0.92[JPT][hapmap];0.82[EUR][1000 genomes]
rs2047649	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2085315	0.83[EUR][1000 genomes]
rs2088815	0.88[CHB][hapmap]
rs2124497	0.87[CHB][hapmap];0.92[JPT][hapmap];0.83[EUR][1000 genomes]
rs2168430	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes]
rs2168431	0.87[CHB][hapmap];0.92[JPT][hapmap];0.83[EUR][1000 genomes]
rs2305620	1.00[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes]
rs2305622	0.83[EUR][1000 genomes]
rs28638274	0.83[CEU][hapmap]
rs35004310	0.83[EUR][1000 genomes]
rs3816527	0.82[JPT][hapmap]
rs3816528	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes]
rs4435581	0.84[EUR][1000 genomes]
rs4640512	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes]
rs4640513	0.84[CEU][hapmap]
rs4679793	1.00[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes]
rs4680351	0.93[CHB][hapmap];0.83[JPT][hapmap]
rs4680358	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680359	1.00[CHB][hapmap]
rs4680360	0.95[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes]
rs4680367	0.81[JPT][hapmap]
rs6441121	0.88[CHB][hapmap]
rs6441124	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6441126	0.94[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes]
rs6441127	0.85[EUR][1000 genomes]
rs6441128	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes]
rs6441129	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes]
rs6776647	0.93[CHB][hapmap];0.83[JPT][hapmap]
rs6780399	0.96[ASN][1000 genomes]
rs6801110	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6803628	0.87[CHB][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes]
rs722484	0.84[EUR][1000 genomes]
rs7614339	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs7617727	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes]
rs7618737	0.85[EUR][1000 genomes]
rs7623173	1.00[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs7626884	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs7629293	0.83[EUR][1000 genomes]
rs7631556	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7639254	0.95[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap]
rs885094	0.96[ASN][1000 genomes]
rs924517	0.88[CHB][hapmap]
rs9867618	0.88[CHB][hapmap]
rs9871290	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes]
rs9878474	1.00[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes]
rs9883103	0.88[CHB][hapmap]
rs9883822	0.83[ASN][1000 genomes]
rs988587	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs988588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9990136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157066000-157086800	Weak transcription	Pancreas	Pancrea
2	chr3:157066600-157083200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:157073400-157079800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:157076400-157079600	Enhancers	Osteobl	bone
5	chr3:157076600-157079000	Enhancers	Hela-S3	cervix
6	chr3:157076600-157079600	Enhancers	NHDF-Ad	bronchial
7	chr3:157076800-157079400	Enhancers	HSMM	muscle
8	chr3:157077200-157079400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:157077200-157081000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:157077600-157083400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:157078200-157083400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:157078200-157102400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr3:157078600-157079200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:157078600-157079400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:157078600-157079400	Enhancers	A549	lung
16	chr3:157078600-157079600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:157078600-157079600	Enhancers	HUVEC	blood vessel
18	chr3:157078600-157083800	Enhancers	Muscle Satellite Cultured Cells	--
19	chr3:157078800-157080600	Weak transcription	NHLF	lung
20	chr3:157078800-157083600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:157078800-157091600	Weak transcription	NH-A	brain

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