Variant report

Variant	rs6801110
Chromosome Location	chr3:157084731-157084732
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1027603	0.94[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs10936085	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs10936086	0.94[CHB][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10936087	1.00[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12486427	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12492874	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12492929	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12496879	0.94[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs12629552	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12636038	0.83[EUR][1000 genomes]
rs12638732	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13087207	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1456097	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1456105	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1456106	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1456108	1.00[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes]
rs1456110	0.83[CEU][hapmap]
rs1500916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1500919	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1500920	0.92[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1545596	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs1546261	0.94[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs1563420	1.00[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes]
rs1568609	0.95[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1568612	0.89[CHB][hapmap]
rs1585080	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1824058	1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap]
rs1840668	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1840673	1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs1869857	0.84[CEU][hapmap]
rs1869859	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs1965246	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.82[EUR][1000 genomes]
rs2047649	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2085315	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2088815	0.82[CHB][hapmap]
rs2124497	0.89[CHB][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes]
rs2168430	1.00[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes]
rs2168431	0.89[CHB][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes]
rs2305620	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap]
rs2305622	0.83[EUR][1000 genomes]
rs28638274	0.84[CEU][hapmap]
rs35004310	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3816528	1.00[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs4435581	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4640512	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4640513	0.85[CEU][hapmap]
rs4679793	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs4680351	0.88[CHB][hapmap]
rs4680358	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4680359	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs4680360	0.96[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6441121	0.84[CHB][hapmap]
rs6441124	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6441126	0.89[CHB][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6441127	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6441128	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6441129	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap]
rs6776647	0.88[CHB][hapmap]
rs6780399	0.88[ASN][1000 genomes]
rs6803628	0.89[CHB][hapmap];0.83[JPT][hapmap]
rs722484	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7614339	0.94[CHB][hapmap]
rs7617727	1.00[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7618737	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7623173	1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs7629293	0.83[EUR][1000 genomes]
rs7631556	0.94[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs7639254	0.95[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs885094	0.88[ASN][1000 genomes]
rs924517	0.83[CHB][hapmap]
rs9857875	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9867618	0.83[CHB][hapmap]
rs9871290	1.00[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9878474	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs9883103	0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs988587	1.00[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs988588	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9990136	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157066000-157086800	Weak transcription	Pancreas	Pancrea
2	chr3:157078200-157102400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr3:157078800-157091600	Weak transcription	NH-A	brain
4	chr3:157079200-157087600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:157081600-157091600	Weak transcription	NHLF	lung
6	chr3:157081600-157093800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr3:157083200-157084800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:157083600-157086800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:157083600-157086800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:157083600-157087000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:157083600-157087000	Weak transcription	A549	lung
12	chr3:157083600-157105800	Weak transcription	HSMM	muscle
13	chr3:157083800-157087000	Weak transcription	NHDF-Ad	bronchial
14	chr3:157083800-157087800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr3:157083800-157092800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:157083800-157093600	Weak transcription	Fetal Brain Male	brain
17	chr3:157084000-157085800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr3:157084000-157087000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:157084000-157087000	Weak transcription	HUVEC	blood vessel
20	chr3:157084200-157087000	Weak transcription	Osteobl	bone
21	chr3:157084600-157084800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr3:157084600-157085000	Enhancers	Fetal Lung	lung
23	chr3:157084600-157085400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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