Variant report

Variant	rs9883103
Chromosome Location	chr3:157088982-157088983
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1027603	0.84[CHB][hapmap]
rs10936085	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10936086	0.84[CHB][hapmap]
rs10936087	0.84[CHB][hapmap]
rs12486427	0.84[CHB][hapmap]
rs12496879	0.84[CHB][hapmap]
rs12629552	0.83[ASN][1000 genomes]
rs12638732	0.84[CHB][hapmap]
rs1456097	0.84[CHB][hapmap]
rs1456108	0.89[CHB][hapmap]
rs1500916	0.89[CHB][hapmap];0.81[ASN][1000 genomes]
rs1500920	0.83[CHB][hapmap]
rs1545596	0.89[CHB][hapmap]
rs1546261	0.84[CHB][hapmap]
rs1563420	0.89[CHB][hapmap]
rs1568609	0.84[CHB][hapmap];0.86[LWK][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs1585080	0.84[CHB][hapmap]
rs1824058	0.83[CHB][hapmap]
rs1840668	0.84[CHB][hapmap]
rs1840673	0.89[CHB][hapmap]
rs1869859	0.89[CHB][hapmap]
rs1965246	0.89[CHB][hapmap]
rs2047649	0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs2124497	0.89[CHB][hapmap]
rs2168430	0.88[CHB][hapmap]
rs2168431	0.89[CHB][hapmap]
rs2305620	0.83[CHB][hapmap]
rs3816528	0.84[CHB][hapmap]
rs4640512	0.84[CHB][hapmap]
rs4679793	0.83[CHB][hapmap]
rs4680359	1.00[ASW][hapmap];0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441128	0.83[CHB][hapmap]
rs6801110	0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs7614339	0.81[CHB][hapmap]
rs7617727	0.84[CHB][hapmap]
rs7623173	0.89[CHB][hapmap]
rs7631556	0.84[CHB][hapmap]
rs7639254	0.84[CHB][hapmap]
rs9857875	0.88[CHB][hapmap]
rs9871290	0.84[CHB][hapmap]
rs9878474	0.83[CHB][hapmap]
rs9883822	0.84[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs988588	0.84[CHB][hapmap]
rs9990136	0.84[CHB][hapmap]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157078200-157102400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:157078800-157091600	Weak transcription	NH-A	brain
3	chr3:157081600-157091600	Weak transcription	NHLF	lung
4	chr3:157081600-157093800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:157083600-157105800	Weak transcription	HSMM	muscle
6	chr3:157083800-157092800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:157083800-157093600	Weak transcription	Fetal Brain Male	brain
8	chr3:157085000-157091600	Weak transcription	Aorta	Aorta
9	chr3:157086200-157091600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:157086400-157090200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:157086800-157089200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:157086800-157089200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:157086800-157089200	Enhancers	Fetal Lung	lung
14	chr3:157087000-157089000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:157087000-157089400	Enhancers	NHDF-Ad	bronchial
16	chr3:157087000-157089400	Enhancers	Osteobl	bone
17	chr3:157087200-157089000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr3:157087400-157091400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr3:157087400-157091400	Weak transcription	Pancreas	Pancrea
20	chr3:157088000-157108600	Weak transcription	Lung	lung
21	chr3:157088200-157090800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr3:157088200-157091400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr3:157088200-157093800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr3:157088400-157089200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:157088400-157091400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr3:157088400-157092800	Weak transcription	HUVEC	blood vessel
27	chr3:157088600-157091400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr3:157088600-157105400	Weak transcription	Muscle Satellite Cultured Cells	--

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