Variant report

Variant	rs1500920
Chromosome Location	chr3:157055830-157055831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1027603	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10936085	0.94[CHB][hapmap]
rs10936086	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs10936087	0.92[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap]
rs12486427	0.92[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap]
rs12496879	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12629552	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12638732	0.92[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap]
rs1456097	0.92[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap]
rs1456108	0.92[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap]
rs1500916	0.91[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1500919	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1545596	0.91[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap]
rs1546261	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1563420	0.92[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap]
rs1568609	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1568612	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs1585080	0.92[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap]
rs1824058	0.92[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap]
rs1840668	0.92[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap]
rs1840673	0.92[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap]
rs1869859	0.91[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap]
rs1965246	0.92[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap]
rs2047649	0.92[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2088815	0.94[CHB][hapmap]
rs2124497	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs2168430	0.92[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap]
rs2168431	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs2305620	0.91[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap]
rs3816527	0.81[JPT][hapmap]
rs3816528	0.91[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap]
rs4640512	0.92[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap]
rs4679793	0.91[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap]
rs4680351	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs4680358	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680359	0.94[CHB][hapmap]
rs4680360	0.87[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs4680367	0.81[JPT][hapmap]
rs6441121	0.94[CHB][hapmap]
rs6441124	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6441126	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs6441128	0.92[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs6441129	0.91[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap]
rs6776647	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs6780399	0.96[ASN][1000 genomes]
rs6801110	0.92[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6803628	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs7614339	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs7617727	0.91[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap]
rs7623173	0.91[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap]
rs7626884	0.81[JPT][hapmap]
rs7631556	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7639254	0.87[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap]
rs885094	0.96[ASN][1000 genomes]
rs924517	0.94[CHB][hapmap]
rs9857875	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9867618	0.94[CHB][hapmap]
rs9871290	0.91[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap]
rs9878474	0.91[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap]
rs9883103	0.83[CHB][hapmap]
rs9883822	0.83[ASN][1000 genomes]
rs988587	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs988588	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9990136	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157041000-157065600	Weak transcription	Pancreas	Pancrea
2	chr3:157048200-157057000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:157051000-157056200	Enhancers	HUVEC	blood vessel
4	chr3:157054400-157056600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:157054400-157057200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:157054400-157058000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:157054600-157056200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:157054600-157056600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:157054600-157056600	Weak transcription	NHDF-Ad	bronchial
10	chr3:157054600-157056800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:157054600-157057000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:157054800-157065200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:157055400-157057200	Weak transcription	A549	lung
14	chr3:157055800-157065600	Weak transcription	Osteobl	bone

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