Variant report

Variant	rs9867618
Chromosome Location	chr3:156901525-156901526
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156900974..156902930-chr3:156903103..156904931,2	K562	blood:
2	chr3:156901238..156905299-chr3:156943501..156945279,3	K562	blood:
3	chr3:156900351..156902675-chr3:156903274..156905529,2	MCF-7	breast:
4	chr3:156144912..156147229-chr3:156901499..156903526,2	MCF-7	breast:
5	chr3:156891132..156894971-chr3:156899570..156902843,3	MCF-7	breast:
6	chr3:156877157..156879414-chr3:156900550..156902527,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000222675	Chromatin interaction
ENSG00000243176	Chromatin interaction
ENSG00000163660	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10212545	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1027603	0.89[CHB][hapmap]
rs10451871	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10451916	0.87[MEX][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1046938	0.91[MEX][hapmap];0.84[TSI][hapmap]
rs10936085	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs11926167	0.80[EUR][1000 genomes]
rs12496879	0.89[CHB][hapmap]
rs12629549	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12637518	0.83[AMR][1000 genomes]
rs13061214	0.80[CEU][hapmap]
rs13081038	0.87[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13084070	0.87[EUR][1000 genomes]
rs1392799	0.87[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1403104	0.80[TSI][hapmap]
rs1500916	0.83[CHB][hapmap]
rs1500920	0.94[CHB][hapmap]
rs1546261	0.89[CHB][hapmap]
rs1568609	0.89[CHB][hapmap]
rs1568612	0.94[CHB][hapmap]
rs1587534	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16827350	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2047649	0.83[CHB][hapmap]
rs2088810	0.84[ASN][1000 genomes]
rs2088814	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2088815	0.88[CHB][hapmap]
rs2133952	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28384296	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35217153	0.85[EUR][1000 genomes]
rs3749214	0.83[MEX][hapmap];0.84[TSI][hapmap]
rs4368452	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4383468	0.84[EUR][1000 genomes]
rs4563363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4632503	0.80[EUR][1000 genomes]
rs4680342	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs4680344	0.83[EUR][1000 genomes]
rs4680346	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4680348	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4680351	0.94[CHB][hapmap]
rs4680359	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs6441114	0.89[EUR][1000 genomes]
rs6441121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441122	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67196056	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6767619	0.85[EUR][1000 genomes]
rs6771109	0.81[ASN][1000 genomes]
rs6776647	0.94[CHB][hapmap]
rs6780831	0.80[EUR][1000 genomes]
rs6781991	0.87[EUR][1000 genomes]
rs6783595	0.84[CEU][hapmap];0.87[EUR][1000 genomes]
rs6789178	0.82[AMR][1000 genomes]
rs6801110	0.83[CHB][hapmap]
rs6805114	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6808284	0.80[EUR][1000 genomes]
rs6808457	0.80[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6809003	0.85[CEU][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs6809394	0.85[CEU][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs7614339	1.00[CHB][hapmap]
rs7620178	0.83[AMR][1000 genomes]
rs7625059	0.87[MEX][hapmap];0.84[TSI][hapmap]
rs7631556	0.89[CHB][hapmap]
rs7636185	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7638194	0.91[MEX][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7642179	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7647643	0.87[MEX][hapmap];0.84[TSI][hapmap];0.85[EUR][1000 genomes]
rs924517	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9289978	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9289979	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9289980	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9827676	0.81[EUR][1000 genomes]
rs9831830	0.82[AMR][1000 genomes]
rs9834756	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9834771	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9838724	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9848409	0.87[EUR][1000 genomes]
rs9857875	0.88[CHB][hapmap]
rs9861469	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9872340	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs988587	0.83[CHB][hapmap]
rs988588	0.89[CHB][hapmap]
rs9990136	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv520331	chr3:156858300-156915650	Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156894200-156901600	Weak transcription	Right Atrium	heart
2	chr3:156894200-156903000	Weak transcription	Esophagus	oesophagus
3	chr3:156894400-156902400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr3:156894400-156902800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:156894400-156903000	Weak transcription	HSMM	muscle
6	chr3:156894400-156903200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:156894400-156903400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr3:156894400-156903400	Weak transcription	Brain Angular Gyrus	brain
9	chr3:156894400-156903800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:156894400-156906400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr3:156894400-156906600	Weak transcription	Right Ventricle	heart
12	chr3:156894400-156906800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:156894600-156902800	Weak transcription	Liver	Liver
14	chr3:156894600-156902800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr3:156894600-156903000	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr3:156894600-156903000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr3:156894600-156903000	Weak transcription	NHLF	lung
18	chr3:156894600-156903800	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr3:156894600-156904000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr3:156894600-156904000	Weak transcription	Osteobl	bone
21	chr3:156894600-156904400	Weak transcription	Adipose Nuclei	Adipose
22	chr3:156894600-156909000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr3:156894800-156901600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr3:156894800-156902600	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr3:156894800-156902800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr3:156894800-156902800	Weak transcription	Fetal Lung	lung
27	chr3:156894800-156903000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:156894800-156903000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr3:156894800-156904000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr3:156895000-156903200	Weak transcription	Left Ventricle	heart
31	chr3:156895000-156903400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr3:156895200-156901600	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr3:156895200-156902400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr3:156895400-156903400	Weak transcription	Fetal Kidney	kidney
35	chr3:156895600-156902800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr3:156895800-156902200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr3:156896600-156903400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr3:156896800-156903200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr3:156897000-156903400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr3:156897200-156903000	Weak transcription	Thymus	Thymus
41	chr3:156897200-156903000	Weak transcription	Spleen	Spleen
42	chr3:156897600-156901600	Weak transcription	Fetal Stomach	stomach
43	chr3:156897600-156902400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr3:156897600-156902600	Weak transcription	Fetal Thymus	thymus
45	chr3:156897600-156902800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr3:156897800-156903800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr3:156898200-156902400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr3:156898400-156904000	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr3:156898600-156902600	Weak transcription	Primary hematopoietic stem cells	blood
50	chr3:156900000-156904000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood

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