Variant report

Variant	rs1587534
Chromosome Location	chr3:156962761-156962762
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156957752..156961185-chr3:156962599..156965057,3	K562	blood:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10212545	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1027603	0.86[CHB][hapmap]
rs10451871	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10451916	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1046938	0.83[YRI][hapmap];0.81[EUR][1000 genomes]
rs10936085	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs11926167	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12496879	0.87[CHB][hapmap]
rs12629549	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12637518	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12696045	0.81[EUR][1000 genomes]
rs13061214	0.81[EUR][1000 genomes]
rs13081036	0.81[EUR][1000 genomes]
rs13081038	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13084070	0.82[EUR][1000 genomes]
rs13084522	0.81[EUR][1000 genomes]
rs1392799	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1403103	0.81[EUR][1000 genomes]
rs1500920	0.93[CHB][hapmap]
rs1500925	0.81[EUR][1000 genomes]
rs1546261	0.86[CHB][hapmap]
rs1568609	0.86[CHB][hapmap]
rs1568612	0.93[CHB][hapmap]
rs1587535	0.81[EUR][1000 genomes]
rs1608127	0.81[EUR][1000 genomes]
rs16827350	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16827384	0.81[EUR][1000 genomes]
rs2047649	0.81[CHB][hapmap]
rs2088814	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2088815	0.86[CHB][hapmap]
rs2133952	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28384296	0.89[EUR][1000 genomes]
rs35217153	0.80[EUR][1000 genomes]
rs3749214	0.81[EUR][1000 genomes]
rs4368452	0.93[EUR][1000 genomes]
rs4563363	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4632503	0.86[EUR][1000 genomes]
rs4680342	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs4680346	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4680348	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4680351	0.93[CHB][hapmap]
rs4680359	0.81[CEU][hapmap];0.80[JPT][hapmap]
rs6441114	0.84[EUR][1000 genomes]
rs6441121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6441122	0.83[AMR][1000 genomes]
rs6441123	0.81[EUR][1000 genomes]
rs67196056	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6767619	0.80[EUR][1000 genomes]
rs6773061	0.81[EUR][1000 genomes]
rs6776647	0.93[CHB][hapmap]
rs6780831	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6781991	0.82[EUR][1000 genomes]
rs6783595	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs6789178	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6801110	0.81[CHB][hapmap]
rs6805114	0.82[AMR][1000 genomes]
rs6808284	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6808457	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6809003	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs6809394	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs7614339	1.00[CHB][hapmap]
rs7620178	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7625059	0.81[EUR][1000 genomes]
rs7631556	0.87[CHB][hapmap]
rs7636185	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7638194	0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7642179	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7647643	0.80[EUR][1000 genomes]
rs924517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9289978	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9289979	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9289980	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9811195	0.81[EUR][1000 genomes]
rs9827676	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9831830	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9834756	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9834771	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9838724	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9848409	0.82[EUR][1000 genomes]
rs9849168	0.81[EUR][1000 genomes]
rs9857875	0.86[CHB][hapmap]
rs9861469	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9867618	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9872340	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs988588	0.86[CHB][hapmap]
rs9990136	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156955200-156966600	Weak transcription	Pancreas	Pancrea
2	chr3:156955800-156964800	Weak transcription	Right Atrium	heart
3	chr3:156957200-156965200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:156957400-156965000	Weak transcription	Primary T cells from cord blood	blood
5	chr3:156957400-156965000	Weak transcription	Fetal Stomach	stomach
6	chr3:156957600-156964800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:156957600-156966600	Weak transcription	Lung	lung
8	chr3:156958400-156971200	Weak transcription	Primary B cells from cord blood	blood
9	chr3:156959000-156965000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:156959400-156965000	Weak transcription	HUVEC	blood vessel
11	chr3:156962000-156963000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:156962000-156963600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:156962000-156964400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:156962400-156963400	Enhancers	Osteobl	bone
15	chr3:156962600-156963000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:156962600-156963400	Weak transcription	Brain Angular Gyrus	brain
17	chr3:156962600-156963600	Enhancers	NHDF-Ad	bronchial

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