Variant report
| Variant | rs28384296 |
|---|---|
| Chromosome Location | chr3:156917071-156917072 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:156875185..156880246-chr3:156915839..156922107,12 | K562 | blood: | |
| 2 | chr3:156875185..156879753-chr3:156915839..156922107,8 | K562 | blood: | |
| 3 | chr3:156875709..156878595-chr3:156916349..156920525,3 | MCF-7 | breast: | |
| 4 | chr3:156892067..156894658-chr3:156915891..156917488,2 | MCF-7 | breast: | |
| 5 | chr3:156916616..156918556-chr3:156921435..156923956,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000243176 | Chromatin interaction |
| ENSG00000163660 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10212545 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12629549 | 0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1587534 | 0.89[EUR][1000 genomes] |
| rs2088814 | 0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2133952 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4368452 | 0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs4563363 | 0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4680342 | 0.82[EUR][1000 genomes] |
| rs4680348 | 0.90[EUR][1000 genomes] |
| rs6441114 | 0.82[EUR][1000 genomes] |
| rs6441121 | 0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs67196056 | 0.90[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs6781991 | 0.80[EUR][1000 genomes] |
| rs6783595 | 0.80[EUR][1000 genomes] |
| rs6809003 | 0.80[EUR][1000 genomes] |
| rs6809394 | 0.80[EUR][1000 genomes] |
| rs924517 | 0.85[EUR][1000 genomes] |
| rs9289980 | 0.85[EUR][1000 genomes] |
| rs9834756 | 0.81[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9834771 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs9838724 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9848409 | 0.80[EUR][1000 genomes] |
| rs9867618 | 0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9872340 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829766 | chr3:156811536-157020551 | Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 144 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:156905000-156922800 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
| 2 | chr3:156905200-156919200 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
