Variant report

Variant	rs2088810
Chromosome Location	chr3:156908314-156908315
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12629549	0.81[ASN][1000 genomes]
rs1546261	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1568612	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2088814	0.83[ASN][1000 genomes]
rs2133952	0.83[ASN][1000 genomes]
rs4563363	0.84[ASN][1000 genomes]
rs4680351	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6441117	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6441121	0.84[ASN][1000 genomes]
rs6765828	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6771109	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6776647	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6780399	0.84[AMR][1000 genomes]
rs7614339	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs885094	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9838724	0.81[ASN][1000 genomes]
rs9867618	0.84[ASN][1000 genomes]
rs9872340	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv520331	chr3:156858300-156915650	Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156894600-156909000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr3:156905000-156922800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:156905200-156919200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:156905800-156908400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:156907800-156908800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:156907800-156908800	Enhancers	Hela-S3	cervix
7	chr3:156908200-156908800	Enhancers	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links