Variant report

Variant	rs1157738
Chromosome Location	chr3:156960523-156960524
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156957752..156961185-chr3:156962599..156965057,3	K562	blood:
2	chr3:156875949..156879097-chr3:156957620..156960607,3	K562	blood:

Variant related genes	Relation type
ENSG00000163660	Chromatin interaction

Extended variants
information (count: 134 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:132)

rs_ID	r²[population]
rs10451916	0.87[CEU][hapmap]
rs1046938	0.87[CEU][hapmap]
rs10513507	0.88[CEU][hapmap]
rs10513508	0.82[CEU][hapmap]
rs1060543	0.87[CEU][hapmap]
rs10804777	0.86[CHB][hapmap]
rs10936063	0.86[CEU][hapmap]
rs10936066	0.86[CEU][hapmap]
rs10936067	0.88[AMR][1000 genomes]
rs10936068	0.90[AMR][1000 genomes]
rs10936069	0.86[AMR][1000 genomes]
rs10936074	0.85[AMR][1000 genomes]
rs10936078	0.80[CEU][hapmap]
rs10936080	0.83[CEU][hapmap]
rs10936081	0.83[CEU][hapmap]
rs12488480	0.86[CEU][hapmap]
rs12489453	0.87[AMR][1000 genomes]
rs12489799	0.87[AMR][1000 genomes]
rs12490836	0.87[AMR][1000 genomes]
rs12492801	0.86[CEU][hapmap]
rs12493531	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12496051	0.90[AMR][1000 genomes]
rs12496111	0.85[CEU][hapmap];0.88[AMR][1000 genomes]
rs12632562	0.81[CEU][hapmap]
rs12633429	0.86[CEU][hapmap]
rs12634818	0.90[AMR][1000 genomes]
rs12637932	0.86[CHB][hapmap]
rs13061214	0.91[CEU][hapmap]
rs13081036	0.91[CEU][hapmap]
rs13081038	0.87[CEU][hapmap]
rs1392799	0.87[CEU][hapmap]
rs1403104	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1403106	0.86[CEU][hapmap]
rs1403108	0.82[CEU][hapmap]
rs1500924	0.83[CEU][hapmap]
rs1522392	0.82[CEU][hapmap]
rs1568611	0.83[CEU][hapmap]
rs1587535	0.88[CEU][hapmap]
rs1608127	0.91[CEU][hapmap]
rs16827308	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16827318	0.88[AMR][1000 genomes]
rs16827322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16827352	0.90[AMR][1000 genomes]
rs1969066	0.85[EUR][1000 genomes]
rs1995304	0.87[CEU][hapmap];0.88[AMR][1000 genomes]
rs2047647	0.82[CHB][hapmap]
rs2321740	0.83[AMR][1000 genomes]
rs2874616	0.86[CEU][hapmap]
rs35910014	0.90[AMR][1000 genomes]
rs3749214	0.87[CEU][hapmap]
rs3935750	0.87[CEU][hapmap]
rs4256081	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4413278	0.84[AMR][1000 genomes]
rs4679788	0.83[CEU][hapmap];0.87[AMR][1000 genomes]
rs4680340	0.86[CEU][hapmap]
rs4680342	0.81[CEU][hapmap]
rs4680343	0.86[CEU][hapmap];0.82[AMR][1000 genomes]
rs4680345	0.86[CEU][hapmap];0.82[AMR][1000 genomes]
rs4680346	0.87[CEU][hapmap]
rs4680347	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680352	0.86[CEU][hapmap]
rs4680354	0.82[CEU][hapmap]
rs5003893	0.86[CEU][hapmap]
rs55828309	0.80[AMR][1000 genomes]
rs55835412	0.90[AMR][1000 genomes]
rs55949516	0.90[AMR][1000 genomes]
rs55953639	0.90[AMR][1000 genomes]
rs56078410	0.88[AMR][1000 genomes]
rs56263456	0.88[AMR][1000 genomes]
rs57322659	0.88[AMR][1000 genomes]
rs57511361	0.88[AMR][1000 genomes]
rs58666615	0.90[EUR][1000 genomes]
rs59279023	0.90[AMR][1000 genomes]
rs59485606	0.90[AMR][1000 genomes]
rs60153077	0.88[AMR][1000 genomes]
rs61149035	0.89[AMR][1000 genomes]
rs62274159	0.80[AMR][1000 genomes]
rs62276465	0.86[AMR][1000 genomes]
rs62276470	0.88[AMR][1000 genomes]
rs62276471	0.90[AMR][1000 genomes]
rs62276474	0.90[AMR][1000 genomes]
rs62276475	0.90[AMR][1000 genomes]
rs62276479	0.88[AMR][1000 genomes]
rs62276480	0.88[AMR][1000 genomes]
rs62276488	0.81[AMR][1000 genomes]
rs62276489	0.90[AMR][1000 genomes]
rs62276490	0.88[AMR][1000 genomes]
rs62276491	0.87[AMR][1000 genomes]
rs62276493	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62276495	0.88[AMR][1000 genomes]
rs62276496	0.87[AMR][1000 genomes]
rs62276497	0.89[AMR][1000 genomes]
rs62276501	0.87[AMR][1000 genomes]
rs62276502	0.90[AMR][1000 genomes]
rs62276504	0.87[AMR][1000 genomes]
rs62276505	0.90[AMR][1000 genomes]
rs62276528	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6441115	0.86[CEU][hapmap]
rs6441116	0.86[CEU][hapmap]
rs6441119	0.84[AMR][1000 genomes]
rs6441123	0.87[CEU][hapmap]
rs6767619	0.91[CEU][hapmap]
rs6768052	0.88[AMR][1000 genomes]
rs6768074	0.87[CEU][hapmap];0.87[AMR][1000 genomes]
rs6780205	0.85[AMR][1000 genomes]
rs6781682	0.82[CEU][hapmap];0.82[AMR][1000 genomes]
rs6788214	0.83[CEU][hapmap]
rs6792479	0.88[AMR][1000 genomes]
rs6799567	0.82[CEU][hapmap]
rs6805114	0.82[CEU][hapmap]
rs6805989	0.87[CEU][hapmap];0.82[AMR][1000 genomes]
rs6806232	0.80[AMR][1000 genomes]
rs6808457	0.87[CEU][hapmap]
rs6809307	0.86[CEU][hapmap]
rs68122740	0.94[EUR][1000 genomes]
rs73154649	0.87[AMR][1000 genomes]
rs73154652	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73154657	0.90[AMR][1000 genomes]
rs73154659	0.87[AMR][1000 genomes]
rs73873800	0.88[AMR][1000 genomes]
rs7621912	0.87[CEU][hapmap];0.80[AMR][1000 genomes]
rs7625059	0.87[CEU][hapmap]
rs7626589	0.90[AMR][1000 genomes]
rs7631257	0.83[CEU][hapmap]
rs7638194	0.87[CEU][hapmap]
rs7647643	0.87[CEU][hapmap]
rs7648599	0.86[CEU][hapmap];0.88[AMR][1000 genomes]
rs7649737	0.83[CEU][hapmap]
rs7652298	0.87[CEU][hapmap]
rs872652	0.86[CHB][hapmap]
rs8925	0.86[CEU][hapmap]
rs9827676	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156955200-156966600	Weak transcription	Pancreas	Pancrea
2	chr3:156955800-156964800	Weak transcription	Right Atrium	heart
3	chr3:156957200-156965200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:156957400-156962600	Weak transcription	NHDF-Ad	bronchial
5	chr3:156957400-156965000	Weak transcription	Primary T cells from cord blood	blood
6	chr3:156957400-156965000	Weak transcription	Fetal Stomach	stomach
7	chr3:156957600-156964800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:156957600-156966600	Weak transcription	Lung	lung
9	chr3:156958400-156971200	Weak transcription	Primary B cells from cord blood	blood
10	chr3:156959000-156962000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:156959000-156965000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr3:156959200-156962000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:156959400-156962400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:156959400-156962400	Weak transcription	Osteobl	bone
15	chr3:156959400-156965000	Weak transcription	HUVEC	blood vessel
16	chr3:156960400-156962000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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