Variant report

Variant	rs1568611
Chromosome Location	chr3:157012108-157012109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:157005885..157009539-chr3:157009923..157012607,4	K562	blood:
2	chr3:157007024..157009748-chr3:157011757..157013274,2	MCF-7	breast:

Extended variants
information (count: 128 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs10460861	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10513508	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10513509	0.87[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs10513510	0.82[JPT][hapmap]
rs10513512	0.82[JPT][hapmap]
rs10755111	0.86[CHB][hapmap]
rs10804778	0.87[CHB][hapmap];0.88[JPT][hapmap];0.85[YRI][hapmap];0.85[ASN][1000 genomes]
rs10936063	0.91[CEU][hapmap];0.86[CHB][hapmap]
rs10936066	0.91[CEU][hapmap];0.86[CHB][hapmap]
rs10936074	0.82[AMR][1000 genomes]
rs10936075	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10936077	0.81[CHB][hapmap]
rs10936078	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10936080	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10936081	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10936083	0.90[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs1157738	0.83[CEU][hapmap]
rs11918974	0.82[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs12488480	0.90[CEU][hapmap];0.84[CHB][hapmap]
rs12490120	0.91[CHB][hapmap]
rs12490192	0.85[ASN][1000 genomes]
rs12492801	0.91[CEU][hapmap];0.86[CHB][hapmap]
rs12493531	0.84[AMR][1000 genomes]
rs12494465	0.87[CHB][hapmap];0.88[JPT][hapmap];0.82[YRI][hapmap];0.85[ASN][1000 genomes]
rs12495519	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12496051	0.81[AMR][1000 genomes]
rs12496111	0.90[CEU][hapmap];0.82[CHB][hapmap]
rs12629589	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12632525	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12632562	0.86[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12633429	0.91[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12634054	0.87[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.85[ASN][1000 genomes]
rs12634689	0.87[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.85[ASN][1000 genomes]
rs12634818	0.81[AMR][1000 genomes]
rs12635316	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12636125	0.87[CHB][hapmap]
rs12637476	0.85[CHB][hapmap];0.82[JPT][hapmap];0.83[YRI][hapmap];0.85[ASN][1000 genomes]
rs1403104	0.80[AMR][1000 genomes]
rs1403105	0.86[CHB][hapmap]
rs1403106	0.91[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1403108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1403109	0.91[CHB][hapmap]
rs1474281	0.87[CHB][hapmap];0.88[JPT][hapmap];0.85[YRI][hapmap];0.85[ASN][1000 genomes]
rs1500917	0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs1500918	0.87[CHB][hapmap];0.85[ASN][1000 genomes]
rs1500922	0.94[JPT][hapmap]
rs1500924	1.00[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1522392	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1546260	0.91[CHB][hapmap]
rs16827352	0.81[AMR][1000 genomes]
rs16827483	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16827516	0.86[ASN][1000 genomes]
rs16827530	0.85[ASN][1000 genomes]
rs1875315	0.86[ASN][1000 genomes]
rs1995304	0.91[CEU][hapmap];0.82[CHB][hapmap]
rs2047648	0.95[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2047650	0.85[YRI][hapmap]
rs2173824	0.87[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs2321742	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2321743	0.86[CHB][hapmap]
rs2874616	0.91[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35910014	0.81[AMR][1000 genomes]
rs3935750	0.91[CEU][hapmap]
rs4679788	0.94[CEU][hapmap];0.82[CHB][hapmap]
rs4679789	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4679790	0.87[CHB][hapmap]
rs4679791	0.87[CHB][hapmap]
rs4680340	0.91[CEU][hapmap];0.86[CHB][hapmap]
rs4680343	0.91[CEU][hapmap];0.87[CHB][hapmap]
rs4680345	0.90[CEU][hapmap];0.85[CHB][hapmap]
rs4680349	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4680352	0.91[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4680353	0.86[CHB][hapmap]
rs4680354	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5003893	0.91[CEU][hapmap];0.86[CHB][hapmap]
rs55865575	0.85[ASN][1000 genomes]
rs55949516	0.81[AMR][1000 genomes]
rs55953639	0.81[AMR][1000 genomes]
rs56143236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56150358	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56313302	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59279023	0.81[AMR][1000 genomes]
rs62276490	0.81[AMR][1000 genomes]
rs62276491	0.82[AMR][1000 genomes]
rs62276495	0.81[AMR][1000 genomes]
rs62276496	0.82[AMR][1000 genomes]
rs62276502	0.81[AMR][1000 genomes]
rs62276505	0.81[AMR][1000 genomes]
rs62276528	0.84[AMR][1000 genomes]
rs62278575	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62278582	0.85[ASN][1000 genomes]
rs62278584	0.85[ASN][1000 genomes]
rs62278585	0.85[ASN][1000 genomes]
rs62278586	0.84[ASN][1000 genomes]
rs62278596	0.83[ASN][1000 genomes]
rs62278597	0.85[ASN][1000 genomes]
rs62278598	0.85[ASN][1000 genomes]
rs62281377	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62281379	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62281383	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6441115	0.90[CEU][hapmap];0.86[CHB][hapmap]
rs6441116	0.91[CEU][hapmap];0.86[CHB][hapmap]
rs6768074	0.91[CEU][hapmap];0.85[CHB][hapmap]
rs6780205	0.82[AMR][1000 genomes]
rs6781682	0.86[CEU][hapmap];0.86[CHB][hapmap]
rs6788214	0.88[CEU][hapmap]
rs6799567	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6805989	0.91[CEU][hapmap];0.87[CHB][hapmap]
rs6809307	0.91[CEU][hapmap];0.86[CHB][hapmap]
rs73154657	0.81[AMR][1000 genomes]
rs73154671	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73154682	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73156756	0.85[ASN][1000 genomes]
rs73156757	0.83[ASN][1000 genomes]
rs7610214	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7619892	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7621912	0.91[CEU][hapmap];0.87[CHB][hapmap]
rs7624327	0.82[YRI][hapmap]
rs7626589	0.81[AMR][1000 genomes]
rs7631257	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7648599	0.91[CEU][hapmap];0.86[CHB][hapmap]
rs7649737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7652298	0.91[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8925	0.90[CEU][hapmap];0.86[CHB][hapmap]
rs924516	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs949854	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157000600-157015400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:157004800-157028200	Weak transcription	HUVEC	blood vessel
3	chr3:157005600-157015000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr3:157007600-157012200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:157009000-157012200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:157009000-157012400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:157009200-157012200	Weak transcription	NH-A	brain
8	chr3:157010000-157012200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr3:157010200-157012200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:157010200-157012200	Weak transcription	HSMM	muscle
11	chr3:157010400-157012200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:157010400-157012200	Weak transcription	NHDF-Ad	bronchial
13	chr3:157010800-157012200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:157010800-157014800	Enhancers	Osteobl	bone
15	chr3:157010800-157015000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:157011000-157013200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:157011000-157014600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:157011200-157017800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr3:157011800-157012400	Enhancers	Fetal Lung	lung
20	chr3:157012000-157012400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr3:157012000-157012400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:157012000-157012400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:157012000-157013000	Enhancers	HSMMtube	muscle
24	chr3:157012000-157013200	Enhancers	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links