Variant report

Variant	rs56150358
Chromosome Location	chr3:156990252-156990253
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156987878..156990782-chr3:156994349..156996892,2	MCF-7	breast:
2	chr3:156988336..156991271-chr3:156994407..156996753,2	K562	blood:

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10460861	0.88[AMR][1000 genomes]
rs10513508	0.83[AMR][1000 genomes]
rs10936067	0.80[EUR][1000 genomes]
rs10936068	0.80[EUR][1000 genomes]
rs10936069	0.80[EUR][1000 genomes]
rs10936074	0.86[EUR][1000 genomes]
rs10936075	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10936078	0.83[AMR][1000 genomes]
rs10936080	0.83[AMR][1000 genomes]
rs10936081	0.83[AMR][1000 genomes]
rs12489453	0.84[EUR][1000 genomes]
rs12489799	0.83[EUR][1000 genomes]
rs12490836	0.82[EUR][1000 genomes]
rs12496051	0.84[EUR][1000 genomes]
rs12496111	0.80[EUR][1000 genomes]
rs12629589	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12632525	0.82[EUR][1000 genomes]
rs12632562	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12633429	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12634818	0.80[EUR][1000 genomes]
rs12635316	0.83[AMR][1000 genomes]
rs1403106	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1403108	0.88[AMR][1000 genomes]
rs1500924	0.83[AMR][1000 genomes]
rs1522392	0.83[AMR][1000 genomes]
rs1568611	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16827318	0.84[EUR][1000 genomes]
rs16827352	0.86[EUR][1000 genomes]
rs16827483	0.83[AMR][1000 genomes]
rs1995304	0.80[EUR][1000 genomes]
rs2047648	0.83[AMR][1000 genomes]
rs2321742	0.87[AMR][1000 genomes]
rs2874616	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35910014	0.84[EUR][1000 genomes]
rs4679788	0.84[EUR][1000 genomes]
rs4679789	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4679790	0.81[ASN][1000 genomes]
rs4680349	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4680352	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4680353	0.81[ASN][1000 genomes]
rs4680354	0.83[AMR][1000 genomes]
rs55835412	0.80[EUR][1000 genomes]
rs55949516	0.82[EUR][1000 genomes]
rs55953639	0.80[EUR][1000 genomes]
rs56078410	0.80[EUR][1000 genomes]
rs56143236	0.89[AMR][1000 genomes]
rs56263456	0.80[EUR][1000 genomes]
rs56313302	0.83[AMR][1000 genomes]
rs57322659	0.80[EUR][1000 genomes]
rs57511361	0.80[EUR][1000 genomes]
rs59279023	0.86[EUR][1000 genomes]
rs60153077	0.80[EUR][1000 genomes]
rs62276470	0.80[EUR][1000 genomes]
rs62276471	0.80[EUR][1000 genomes]
rs62276474	0.80[EUR][1000 genomes]
rs62276475	0.80[EUR][1000 genomes]
rs62276479	0.80[EUR][1000 genomes]
rs62276480	0.82[EUR][1000 genomes]
rs62276489	0.80[EUR][1000 genomes]
rs62276490	0.80[EUR][1000 genomes]
rs62276491	0.80[EUR][1000 genomes]
rs62276495	0.80[EUR][1000 genomes]
rs62276496	0.80[EUR][1000 genomes]
rs62276501	0.83[EUR][1000 genomes]
rs62276502	0.83[EUR][1000 genomes]
rs62276504	0.84[EUR][1000 genomes]
rs62276505	0.86[EUR][1000 genomes]
rs62278575	0.83[AMR][1000 genomes]
rs62281377	0.83[AMR][1000 genomes]
rs62281379	0.83[AMR][1000 genomes]
rs62281383	0.83[AMR][1000 genomes]
rs6768052	0.80[EUR][1000 genomes]
rs6768074	0.86[EUR][1000 genomes]
rs6780205	0.86[EUR][1000 genomes]
rs6792479	0.80[EUR][1000 genomes]
rs6799567	0.88[AMR][1000 genomes]
rs73154657	0.82[EUR][1000 genomes]
rs73154659	0.84[EUR][1000 genomes]
rs73154671	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73154682	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7610214	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7619892	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7626589	0.83[EUR][1000 genomes]
rs7631257	0.83[AMR][1000 genomes]
rs7648599	0.83[EUR][1000 genomes]
rs7649737	0.89[AMR][1000 genomes]
rs7652298	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs924516	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs949854	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156967200-157000000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:156967200-157000000	Weak transcription	NH-A	brain
3	chr3:156967200-157007800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:156979600-156997000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:156981200-156991400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:156981600-156991000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:156982400-156992800	Weak transcription	Osteobl	bone
8	chr3:156982400-156997000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:156984200-156998200	Weak transcription	HUVEC	blood vessel
10	chr3:156988000-157005800	Weak transcription	Pancreas	Pancrea
11	chr3:156988600-156991200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:156989400-156999800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:156989600-156991800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:156989800-156991000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr3:156990000-156991200	Weak transcription	H9 Cell Line	embryonic stem cell

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