Variant report

Variant	rs2321742
Chromosome Location	chr3:157013601-157013602
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10460861	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10513508	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10513509	0.84[ASN][1000 genomes]
rs10804778	0.84[ASN][1000 genomes]
rs10936075	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10936078	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10936080	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10936081	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10936083	0.84[ASN][1000 genomes]
rs11918974	0.84[ASN][1000 genomes]
rs12490192	0.84[ASN][1000 genomes]
rs12493531	0.82[AMR][1000 genomes]
rs12494465	0.84[ASN][1000 genomes]
rs12495519	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12629589	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12632525	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12632562	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12633429	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12634054	0.84[ASN][1000 genomes]
rs12634689	0.84[ASN][1000 genomes]
rs12635316	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12637476	0.84[ASN][1000 genomes]
rs1403106	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1403108	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1474281	0.84[ASN][1000 genomes]
rs1500917	0.84[ASN][1000 genomes]
rs1500918	0.84[ASN][1000 genomes]
rs1500924	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1522392	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1568611	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16827483	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16827516	0.85[ASN][1000 genomes]
rs16827530	0.84[ASN][1000 genomes]
rs1875315	0.85[ASN][1000 genomes]
rs2047648	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2173824	0.84[ASN][1000 genomes]
rs2874616	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4679789	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4680349	0.92[AMR][1000 genomes]
rs4680352	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4680354	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55865575	0.84[ASN][1000 genomes]
rs56143236	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56150358	0.87[AMR][1000 genomes]
rs56313302	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62276528	0.82[AMR][1000 genomes]
rs62278575	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62278582	0.84[ASN][1000 genomes]
rs62278584	0.84[ASN][1000 genomes]
rs62278585	0.84[ASN][1000 genomes]
rs62278586	0.83[ASN][1000 genomes]
rs62278596	0.82[ASN][1000 genomes]
rs62278597	0.84[ASN][1000 genomes]
rs62278598	0.84[ASN][1000 genomes]
rs62281377	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62281379	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62281383	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6799567	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73154671	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73154682	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73156756	0.84[ASN][1000 genomes]
rs73156757	0.82[ASN][1000 genomes]
rs7610214	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7619892	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7631257	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7649737	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7652298	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs924516	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs949854	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157000600-157015400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:157004800-157028200	Weak transcription	HUVEC	blood vessel
3	chr3:157005600-157015000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr3:157010800-157014800	Enhancers	Osteobl	bone
5	chr3:157010800-157015000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:157011000-157014600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:157011200-157017800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:157012200-157014400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:157012200-157014400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:157012200-157014400	Enhancers	NHDF-Ad	bronchial
11	chr3:157012400-157014000	Weak transcription	Fetal Lung	lung
12	chr3:157013000-157017400	Weak transcription	HSMMtube	muscle
13	chr3:157013000-157018600	Weak transcription	K562	blood
14	chr3:157013000-157032600	Weak transcription	NH-A	brain
15	chr3:157013200-157015600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:157013200-157017400	Weak transcription	HSMM	muscle
17	chr3:157013200-157017400	Weak transcription	NHLF	lung
18	chr3:157013200-157019600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links