Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156876934..156879709-chr3:156982846..156986882,3	K562	blood:

Variant related genes	Relation type
ENSG00000163660	Chromatin interaction

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10513507	0.80[EUR][1000 genomes]
rs10936075	0.82[AMR][1000 genomes]
rs1157738	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12493531	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12629589	0.85[AMR][1000 genomes]
rs12633429	0.82[AMR][1000 genomes]
rs1403104	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1403106	0.84[AMR][1000 genomes]
rs1403108	0.83[AMR][1000 genomes]
rs1568611	0.84[AMR][1000 genomes]
rs16827308	0.86[EUR][1000 genomes]
rs16827322	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2321742	0.82[AMR][1000 genomes]
rs2874616	0.85[AMR][1000 genomes]
rs4256081	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4680347	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4680349	0.87[AMR][1000 genomes]
rs4680352	0.85[AMR][1000 genomes]
rs56143236	0.84[AMR][1000 genomes]
rs58666615	0.82[EUR][1000 genomes]
rs62276493	0.86[EUR][1000 genomes]
rs62279635	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6799567	0.85[AMR][1000 genomes]
rs68122740	0.86[EUR][1000 genomes]
rs73154652	0.85[EUR][1000 genomes]
rs73154671	0.90[AMR][1000 genomes]
rs73154682	0.87[AMR][1000 genomes]
rs7610214	0.87[AMR][1000 genomes]
rs7619892	0.85[AMR][1000 genomes]
rs7649737	0.84[AMR][1000 genomes]
rs7652298	0.87[AMR][1000 genomes]
rs924516	0.85[AMR][1000 genomes]
rs949854	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156967200-156989000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:156967200-157000000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:156967200-157000000	Weak transcription	NH-A	brain
4	chr3:156967200-157007800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:156979600-156997000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:156981200-156991400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:156981600-156991000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:156982400-156992800	Weak transcription	Osteobl	bone
9	chr3:156982400-156997000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:156984200-156986000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:156984200-156998200	Weak transcription	HUVEC	blood vessel

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