Variant report

Variant	rs62276493
Chromosome Location	chr3:156927413-156927414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1157738	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12493531	0.88[EUR][1000 genomes]
rs1403104	0.88[EUR][1000 genomes]
rs16827308	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16827322	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1969066	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4256081	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4680347	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56263456	0.80[AMR][1000 genomes]
rs58666615	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62276528	0.86[EUR][1000 genomes]
rs68122740	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73154652	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156919400-156929000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr3:156919600-156928800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr3:156920200-156929600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr3:156923400-156928600	Weak transcription	Colon Smooth Muscle	Colon
5	chr3:156923800-156928400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:156924400-156934000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr3:156925000-156929200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:156925600-156928000	Weak transcription	Pancreas	Pancrea
9	chr3:156926200-156928600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr3:156926600-156928800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:156926600-156929000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr3:156926800-156927800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:156926800-156928000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:156927000-156927600	Strong transcription	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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