Variant report

Variant	rs58666615
Chromosome Location	chr3:156918254-156918255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156875185..156880246-chr3:156915839..156922107,12	K562	blood:
2	chr3:156872801..156875141-chr3:156917968..156922076,3	K562	blood:
3	chr3:156890802..156892781-chr3:156917700..156920010,2	MCF-7	breast:
4	chr3:156873291..156875141-chr3:156917968..156919549,2	K562	blood:
5	chr3:156875185..156879753-chr3:156915839..156922107,8	K562	blood:
6	chr3:156891845..156893389-chr3:156917560..156921097,3	MCF-7	breast:
7	chr3:156875720..156879203-chr3:156917751..156922284,5	MCF-7	breast:
8	chr3:156875709..156878595-chr3:156916349..156920525,3	MCF-7	breast:
9	chr3:156916616..156918556-chr3:156921435..156923956,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1157738	0.90[EUR][1000 genomes]
rs12493531	0.84[EUR][1000 genomes]
rs1403104	0.84[EUR][1000 genomes]
rs16827308	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16827322	0.91[EUR][1000 genomes]
rs1969066	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4256081	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4680347	0.90[EUR][1000 genomes]
rs62276493	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62276528	0.82[EUR][1000 genomes]
rs68122740	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73154652	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156905000-156922800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:156905200-156919200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:156917200-156918400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:156917200-156918400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:156917200-156919800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:156917600-156919800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr3:156918000-156919600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:156918000-156920400	Enhancers	Fetal Brain Male	brain
9	chr3:156918200-156919200	Weak transcription	NHDF-Ad	bronchial
10	chr3:156918200-156919200	Weak transcription	NHLF	lung
11	chr3:156918200-156919200	Weak transcription	Osteobl	bone
12	chr3:156918200-156919400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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