Variant report

Variant	rs4256081
Chromosome Location	chr3:156930226-156930227
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156876704..156879523-chr3:156929724..156931977,2	MCF-7	breast:
2	chr3:156928672..156931492-chr3:157212092..157213882,2	MCF-7	breast:
3	chr3:156914056..156915749-chr3:156927497..156930376,2	K562	blood:

Variant related genes	Relation type
ENSG00000197415	Chromatin interaction
ENSG00000163660	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10936067	0.81[AMR][1000 genomes]
rs10936068	0.83[AMR][1000 genomes]
rs1157738	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12493531	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12496051	0.83[AMR][1000 genomes]
rs12496111	0.80[AMR][1000 genomes]
rs12634818	0.83[AMR][1000 genomes]
rs1403104	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16827308	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16827318	0.81[AMR][1000 genomes]
rs16827322	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16827352	0.83[AMR][1000 genomes]
rs1969066	0.89[EUR][1000 genomes]
rs1995304	0.80[AMR][1000 genomes]
rs35910014	0.83[AMR][1000 genomes]
rs4680347	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55835412	0.83[AMR][1000 genomes]
rs55949516	0.83[AMR][1000 genomes]
rs55953639	0.83[AMR][1000 genomes]
rs56078410	0.81[AMR][1000 genomes]
rs56263456	0.84[AMR][1000 genomes]
rs57322659	0.81[AMR][1000 genomes]
rs57511361	0.81[AMR][1000 genomes]
rs58666615	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59279023	0.83[AMR][1000 genomes]
rs59485606	0.83[AMR][1000 genomes]
rs60153077	0.81[AMR][1000 genomes]
rs61149035	0.81[AMR][1000 genomes]
rs62276470	0.81[AMR][1000 genomes]
rs62276471	0.83[AMR][1000 genomes]
rs62276474	0.83[AMR][1000 genomes]
rs62276475	0.83[AMR][1000 genomes]
rs62276479	0.81[AMR][1000 genomes]
rs62276480	0.81[AMR][1000 genomes]
rs62276489	0.83[AMR][1000 genomes]
rs62276490	0.81[AMR][1000 genomes]
rs62276493	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62276495	0.81[AMR][1000 genomes]
rs62276497	0.81[AMR][1000 genomes]
rs62276502	0.83[AMR][1000 genomes]
rs62276505	0.83[AMR][1000 genomes]
rs62276528	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6768052	0.80[AMR][1000 genomes]
rs6792479	0.80[AMR][1000 genomes]
rs68122740	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73154652	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73154657	0.83[AMR][1000 genomes]
rs73873800	0.80[AMR][1000 genomes]
rs7626589	0.83[AMR][1000 genomes]
rs7648599	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156924400-156934000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:156927600-156934400	Weak transcription	Primary T cells from cord blood	blood

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