Variant report

Variant	rs59279023
Chromosome Location	chr3:156956653-156956654
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156956612..156957498-chr3:157211529..157212391,2	MCF-7	breast:
2	chr3:156919699..156922088-chr3:156955960..156958595,2	K562	blood:
3	chr3:156950469..156951990-chr3:156955060..156957422,2	K562	blood:

Extended variants
information (count: 127 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs10936061	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10936062	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10936063	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10936064	0.91[EUR][1000 genomes]
rs10936065	0.91[EUR][1000 genomes]
rs10936066	0.91[EUR][1000 genomes]
rs10936067	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10936068	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10936069	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10936074	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10936075	0.89[EUR][1000 genomes]
rs1157738	0.90[AMR][1000 genomes]
rs12488480	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12489453	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12489799	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12490836	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12492801	0.92[EUR][1000 genomes]
rs12496051	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12496111	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12497891	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12629589	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12630209	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12632525	0.85[ASN][1000 genomes]
rs12633429	0.89[EUR][1000 genomes]
rs12634818	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12635088	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12636125	0.89[EUR][1000 genomes]
rs1403106	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1568611	0.81[AMR][1000 genomes]
rs16827318	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16827322	0.90[AMR][1000 genomes]
rs16827352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17552941	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1995304	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2321740	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2874616	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35910014	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3935750	0.93[EUR][1000 genomes]
rs41272613	0.92[EUR][1000 genomes]
rs4256081	0.83[AMR][1000 genomes]
rs4371471	0.90[EUR][1000 genomes]
rs4383467	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4413278	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4608646	0.91[EUR][1000 genomes]
rs4679788	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4679789	0.82[EUR][1000 genomes]
rs4680340	0.87[EUR][1000 genomes]
rs4680343	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4680345	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4680347	0.90[AMR][1000 genomes]
rs4680349	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4680352	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs5003893	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55828309	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55835412	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55949516	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55953639	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56078410	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56143236	0.81[AMR][1000 genomes]
rs56150358	0.86[EUR][1000 genomes]
rs56263456	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57322659	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57511361	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59210914	0.89[EUR][1000 genomes]
rs59485606	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59865540	0.81[EUR][1000 genomes]
rs60153077	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61149035	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62274129	0.88[EUR][1000 genomes]
rs62274155	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62274156	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62274159	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62276460	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62276461	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62276462	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62276465	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62276470	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62276471	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62276474	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62276475	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62276479	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62276480	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62276488	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62276489	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62276490	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62276491	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62276495	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62276496	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62276497	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62276501	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276502	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276504	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441115	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6441116	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6441119	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6768052	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6768074	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6780205	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6781682	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6792479	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6799567	0.82[AMR][1000 genomes]
rs6805989	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6806232	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6809307	0.87[EUR][1000 genomes]
rs73154633	0.90[EUR][1000 genomes]
rs73154649	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73154657	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73154659	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73154671	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73154682	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73873800	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7610214	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7619892	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7621912	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7626589	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7633004	0.92[EUR][1000 genomes]
rs7648599	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7649737	0.81[AMR][1000 genomes]
rs7652298	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8180056	0.92[EUR][1000 genomes]
rs8180057	0.92[EUR][1000 genomes]
rs8925	0.90[EUR][1000 genomes]
rs924516	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs949854	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156949600-156956800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:156950600-156957000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:156953200-156957200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:156954200-156956800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:156954600-156957400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:156954800-156957400	Enhancers	Fetal Stomach	stomach
7	chr3:156955000-156957200	Enhancers	Stomach Smooth Muscle	stomach
8	chr3:156955200-156957400	Enhancers	Colon Smooth Muscle	Colon
9	chr3:156955200-156966600	Weak transcription	Pancreas	Pancrea
10	chr3:156955600-156957200	Weak transcription	Primary T cells from cord blood	blood
11	chr3:156955600-156959400	Enhancers	Osteobl	bone
12	chr3:156955800-156964800	Weak transcription	Right Atrium	heart
13	chr3:156956000-156957000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:156956400-156957400	Enhancers	NHDF-Ad	bronchial
15	chr3:156956600-156957200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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