Variant report

Variant	rs4413278
Chromosome Location	chr3:156895427-156895428
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156347077..156349787-chr3:156893431..156895606,2	K562	blood:
2	chr3:156895373..156897878-chr3:156901628..156904613,2	K562	blood:

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10936061	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10936062	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10936063	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10936064	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10936065	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10936066	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10936067	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10936068	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10936069	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10936074	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10936075	0.82[EUR][1000 genomes]
rs1157738	0.84[AMR][1000 genomes]
rs12488480	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12489453	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12489799	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12490836	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12492801	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12496051	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12496111	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12497891	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12630209	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12633429	0.82[EUR][1000 genomes]
rs12634818	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12635088	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12636125	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16827318	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16827322	0.84[AMR][1000 genomes]
rs16827352	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17552941	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1995304	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2321740	0.88[EUR][1000 genomes]
rs35910014	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3935750	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs41272613	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4371471	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4383467	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4608646	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4679788	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4680340	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4680343	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4680345	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4680347	0.84[AMR][1000 genomes]
rs4680349	0.85[EUR][1000 genomes]
rs5003893	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55828309	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55835412	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55949516	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55953639	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56078410	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56263456	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57322659	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57511361	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59210914	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59279023	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59485606	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59865540	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60153077	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61149035	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62274129	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62274155	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62274156	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62274159	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62276460	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62276461	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62276462	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62276465	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62276470	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62276471	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62276474	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62276475	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62276479	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62276480	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62276488	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62276489	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62276490	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62276491	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62276495	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62276496	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62276497	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62276501	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62276502	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62276504	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62276505	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6441115	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6441116	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6441119	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6768052	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6768074	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6777922	0.92[AFR][1000 genomes]
rs6780205	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6781682	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6792479	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6805989	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6806232	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6809307	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73154633	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73154649	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73154657	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73154659	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73154671	0.86[EUR][1000 genomes]
rs73154682	0.84[EUR][1000 genomes]
rs73873800	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7610214	0.82[EUR][1000 genomes]
rs7621912	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7626589	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7633004	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7648599	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7652298	0.84[EUR][1000 genomes]
rs8180056	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8180057	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8925	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs949854	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv520331	chr3:156858300-156915650	Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156894000-156900800	Weak transcription	Ovary	ovary
2	chr3:156894200-156895600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:156894200-156895600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
4	chr3:156894200-156896200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:156894200-156896200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:156894200-156896200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:156894200-156896200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:156894200-156896200	Weak transcription	Colonic Mucosa	Colon
9	chr3:156894200-156896200	Weak transcription	Fetal Stomach	stomach
10	chr3:156894200-156901600	Weak transcription	Right Atrium	heart
11	chr3:156894200-156903000	Weak transcription	Esophagus	oesophagus
12	chr3:156894400-156895600	Enhancers	HepG2	liver
13	chr3:156894400-156895800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr3:156894400-156902400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr3:156894400-156902800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr3:156894400-156903000	Weak transcription	HSMM	muscle
17	chr3:156894400-156903200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:156894400-156903400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr3:156894400-156903400	Weak transcription	Brain Angular Gyrus	brain
20	chr3:156894400-156903800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr3:156894400-156906400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr3:156894400-156906600	Weak transcription	Right Ventricle	heart
23	chr3:156894400-156906800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:156894600-156895600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:156894600-156895600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:156894600-156895600	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr3:156894600-156895800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr3:156894600-156895800	Enhancers	Colon Smooth Muscle	Colon
29	chr3:156894600-156896000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr3:156894600-156896000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr3:156894600-156900000	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr3:156894600-156902800	Weak transcription	Liver	Liver
33	chr3:156894600-156902800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr3:156894600-156903000	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr3:156894600-156903000	Weak transcription	Duodenum Mucosa	Duodenum
36	chr3:156894600-156903000	Weak transcription	NHLF	lung
37	chr3:156894600-156903800	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr3:156894600-156904000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr3:156894600-156904000	Weak transcription	Osteobl	bone
40	chr3:156894600-156904400	Weak transcription	Adipose Nuclei	Adipose
41	chr3:156894600-156909000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr3:156894800-156895600	Enhancers	Dnd41	blood
43	chr3:156894800-156895800	Enhancers	K562	blood
44	chr3:156894800-156896200	Weak transcription	Fetal Intestine Small	intestine
45	chr3:156894800-156896200	Weak transcription	Fetal Thymus	thymus
46	chr3:156894800-156896600	Weak transcription	NHDF-Ad	bronchial
47	chr3:156894800-156896800	Weak transcription	Thymus	Thymus
48	chr3:156894800-156898800	Weak transcription	Primary T cells from cord blood	blood
49	chr3:156894800-156901600	Weak transcription	Stomach Smooth Muscle	stomach
50	chr3:156894800-156902600	Weak transcription	Placenta Amnion	Placenta Amnion

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