Variant report

Variant	rs6777922
Chromosome Location	chr3:156896965-156896966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156891997..156895350-chr3:156896829..156899267,3	MCF-7	breast:
2	chr3:156895373..156897878-chr3:156901628..156904613,2	K562	blood:

Variant related genes	Relation type
ENSG00000243176	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10936061	0.87[AFR][1000 genomes]
rs10936062	0.87[AFR][1000 genomes]
rs10936063	0.87[AFR][1000 genomes]
rs10936064	0.87[AFR][1000 genomes]
rs10936065	0.87[AFR][1000 genomes]
rs10936068	0.92[AFR][1000 genomes]
rs12492801	0.85[AFR][1000 genomes]
rs12496111	0.92[AFR][1000 genomes]
rs12630209	0.87[AFR][1000 genomes]
rs12634818	0.92[AFR][1000 genomes]
rs12635088	0.82[AFR][1000 genomes]
rs12636125	0.85[AFR][1000 genomes]
rs17552941	0.87[AFR][1000 genomes]
rs1995304	0.92[AFR][1000 genomes]
rs4371471	0.87[AFR][1000 genomes]
rs4383467	0.87[AFR][1000 genomes]
rs4413278	0.92[AFR][1000 genomes]
rs4680343	0.87[AFR][1000 genomes]
rs4680345	0.87[AFR][1000 genomes]
rs5003893	0.87[AFR][1000 genomes]
rs55828309	0.87[AFR][1000 genomes]
rs55835412	0.89[AFR][1000 genomes]
rs55953639	0.92[AFR][1000 genomes]
rs59210914	0.85[AFR][1000 genomes]
rs59485606	0.92[AFR][1000 genomes]
rs61149035	0.92[AFR][1000 genomes]
rs62274155	0.87[AFR][1000 genomes]
rs62274156	0.85[AFR][1000 genomes]
rs62274159	0.87[AFR][1000 genomes]
rs62276471	0.92[AFR][1000 genomes]
rs62276474	0.92[AFR][1000 genomes]
rs62276475	0.92[AFR][1000 genomes]
rs62276489	0.92[AFR][1000 genomes]
rs62276497	0.87[AFR][1000 genomes]
rs62276502	0.81[AFR][1000 genomes]
rs6441115	0.87[AFR][1000 genomes]
rs6441116	0.87[AFR][1000 genomes]
rs6441119	0.87[AFR][1000 genomes]
rs6768052	0.92[AFR][1000 genomes]
rs6781682	0.87[AFR][1000 genomes]
rs6792479	0.92[AFR][1000 genomes]
rs6805989	0.87[AFR][1000 genomes]
rs73154633	0.87[AFR][1000 genomes]
rs73154657	0.81[AFR][1000 genomes]
rs73873800	0.87[AFR][1000 genomes]
rs7621912	0.85[AFR][1000 genomes]
rs7626589	0.81[AFR][1000 genomes]
rs8180056	0.89[AFR][1000 genomes]
rs8925	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv520331	chr3:156858300-156915650	Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156894000-156900800	Weak transcription	Ovary	ovary
2	chr3:156894200-156901600	Weak transcription	Right Atrium	heart
3	chr3:156894200-156903000	Weak transcription	Esophagus	oesophagus
4	chr3:156894400-156902400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr3:156894400-156902800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:156894400-156903000	Weak transcription	HSMM	muscle
7	chr3:156894400-156903200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:156894400-156903400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr3:156894400-156903400	Weak transcription	Brain Angular Gyrus	brain
10	chr3:156894400-156903800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:156894400-156906400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr3:156894400-156906600	Weak transcription	Right Ventricle	heart
13	chr3:156894400-156906800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:156894600-156900000	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr3:156894600-156902800	Weak transcription	Liver	Liver
16	chr3:156894600-156902800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr3:156894600-156903000	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr3:156894600-156903000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr3:156894600-156903000	Weak transcription	NHLF	lung
20	chr3:156894600-156903800	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr3:156894600-156904000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr3:156894600-156904000	Weak transcription	Osteobl	bone
23	chr3:156894600-156904400	Weak transcription	Adipose Nuclei	Adipose
24	chr3:156894600-156909000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr3:156894800-156898800	Weak transcription	Primary T cells from cord blood	blood
26	chr3:156894800-156901600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr3:156894800-156902600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr3:156894800-156902800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr3:156894800-156902800	Weak transcription	Fetal Lung	lung
30	chr3:156894800-156903000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr3:156894800-156903000	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr3:156894800-156904000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr3:156895000-156897600	Weak transcription	Primary B cells from cord blood	blood
34	chr3:156895000-156903200	Weak transcription	Left Ventricle	heart
35	chr3:156895000-156903400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr3:156895200-156897000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr3:156895200-156901200	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr3:156895200-156901600	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr3:156895200-156902400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr3:156895400-156903400	Weak transcription	Fetal Kidney	kidney
41	chr3:156895600-156901200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr3:156895600-156902800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr3:156895800-156898200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
44	chr3:156895800-156898200	Weak transcription	K562	blood
45	chr3:156895800-156902200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr3:156896000-156897400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
47	chr3:156896000-156898200	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr3:156896200-156897000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr3:156896200-156897000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr3:156896200-156897600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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