Variant report

Variant	rs12635088
Chromosome Location	chr3:156877530-156877531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:156876714-156879143	HUVEC	blood vessel:	n/a	n/a
2	POLR2A	chr3:156875169-156879293	MCF10A-Er-Src	breast:	n/a	n/a
3	TCF12	chr3:156876865-156878956	A549	lung:	n/a	n/a
4	POLR2A	chr3:156876034-156879187	GM12892	blood:	n/a	n/a
5	POLR2A	chr3:156877214-156877704	A549	lung:	n/a	n/a
6	TBP	chr3:156877008-156879123	H1-hESC	embryonic stem cell:	n/a	chr3:156878569-156878580
7	MTA3	chr3:156876897-156879216	GM12878	blood:	n/a	n/a
8	TAF1	chr3:156877022-156878719	SK-N-SH	brain:	n/a	n/a
9	YY1	chr3:156876982-156878314	ECC-1	luminal epithelium:	n/a	chr3:156877370-156877379 chr3:156877323-156877332 chr3:156878064-156878073 chr3:156877327-156877349 chr3:156878059-156878073 chr3:156877318-156877332 chr3:156878065-156878079 chr3:156877327-156877337 chr3:156877367-156877376 chr3:156877315-156877329 chr3:156877365-156877379 chr3:156877330-156877338 chr3:156877370-156877381 chr3:156877367-156877378 chr3:156877327-156877337
10	YY1	chr3:156876764-156878590	SK-N-SH	brain:	n/a	chr3:156877370-156877379 chr3:156877323-156877332 chr3:156878064-156878073 chr3:156877327-156877349 chr3:156878059-156878073 chr3:156877318-156877332 chr3:156878065-156878079 chr3:156877327-156877337 chr3:156877367-156877376 chr3:156877315-156877329 chr3:156877365-156877379 chr3:156877330-156877338 chr3:156877370-156877381 chr3:156877367-156877378 chr3:156877327-156877337
11	POLR2A	chr3:156877099-156878944	GM18526	blood:	n/a	n/a
12	POU2F2	chr3:156877398-156878910	GM12878	blood:	n/a	n/a
13	POLR2A	chr3:156877455-156879114	HUVEC	blood vessel:	n/a	n/a
14	POLR2A	chr3:156877184-156878926	HepG2	liver:	n/a	n/a
15	REST	chr3:156877453-156878355	U87	brain:	n/a	chr3:156877529-156877542
16	POLR2A	chr3:156876806-156878978	GM12891	blood:	n/a	n/a
17	TCF7L2	chr3:156877225-156878701	HCT-116	colon:	n/a	chr3:156878378-156878388
18	POLR2A	chr3:156876935-156878776	GM12878	blood:	n/a	n/a
19	TAF1	chr3:156877047-156878529	MCF-7	breast:	n/a	n/a
20	POLR2A	chr3:156876253-156879191	HepG2	liver:	n/a	n/a
21	POLR2A	chr3:156876812-156879195	GM12892	blood:	n/a	n/a
22	POLR2A	chr3:156875365-156879216	IMR90	lung:	n/a	n/a
23	POLR2A	chr3:156875302-156879130	H1-hESC	embryonic stem cell:	n/a	n/a
24	MBD4	chr3:156877525-156878628	HepG2	liver:	n/a	n/a
25	USF2	chr3:156876888-156878719	GM12878	blood:	n/a	chr3:156877313-156877329 chr3:156877367-156877383 chr3:156877369-156877385
26	POLR2A	chr3:156874371-156879129	GM12891	blood:	n/a	n/a
27	POLR2A	chr3:156876914-156878985	U87	brain:	n/a	n/a
28	POLR2A	chr3:156873921-156879347	MCF10A-Er-Src	breast:	n/a	n/a
29	ETS1	chr3:156877147-156877610	K562	blood:	n/a	chr3:156877287-156877294 chr3:156877367-156877378 chr3:156877370-156877381
30	YY1	chr3:156876987-156878738	A549	lung:	n/a	chr3:156877370-156877379 chr3:156877323-156877332 chr3:156878064-156878073 chr3:156877327-156877349 chr3:156878059-156878073 chr3:156877318-156877332 chr3:156878065-156878079 chr3:156877327-156877337 chr3:156877367-156877376 chr3:156877315-156877329 chr3:156877365-156877379 chr3:156877330-156877338 chr3:156877370-156877381 chr3:156877367-156877378 chr3:156877327-156877337
31	POLR2A	chr3:156877186-156878637	A549	lung:	n/a	n/a
32	POLR2A	chr3:156877002-156878809	GM19193	blood:	n/a	n/a
33	POLR2A	chr3:156874146-156879345	GM12878	blood:	n/a	n/a
34	POLR2A	chr3:156876874-156879077	HCT-116	colon:	n/a	n/a
35	EP300	chr3:156877127-156878938	ECC-1	luminal epithelium:	n/a	chr3:156877371-156877380 chr3:156877321-156877330 chr3:156877368-156877377
36	POLR2A	chr3:156876946-156879009	Raji	blood:	n/a	n/a
37	TBP	chr3:156876964-156878925	K562	blood:	n/a	chr3:156878569-156878580
38	TAF1	chr3:156877014-156878956	ECC-1	luminal epithelium:	n/a	n/a
39	POLR2A	chr3:156875610-156878980	GM12892	blood:	n/a	n/a
40	YY1	chr3:156877021-156878398	K562	blood:	n/a	chr3:156877370-156877379 chr3:156877323-156877332 chr3:156878064-156878073 chr3:156877327-156877349 chr3:156878059-156878073 chr3:156877318-156877332 chr3:156878065-156878079 chr3:156877327-156877337 chr3:156877367-156877376 chr3:156877315-156877329 chr3:156877365-156877379 chr3:156877330-156877338 chr3:156877370-156877381 chr3:156877367-156877378 chr3:156877327-156877337
41	REST	chr3:156877491-156878449	H1-neurons	neurons:	n/a	chr3:156877529-156877542
42	RELA	chr3:156877067-156879276	GM18951	blood:	n/a	n/a
43	POLR2A	chr3:156876780-156879065	PANC-1	pancreas:	n/a	n/a
44	POLR2A	chr3:156876874-156878991	U87	brain:	n/a	n/a
45	E2F1	chr3:156877132-156878763	Hela-S3	cervix:	n/a	chr3:156877371-156877381 chr3:156877365-156877375 chr3:156878358-156878365 chr3:156878015-156878024 chr3:156877361-156877373 chr3:156877368-156877378 chr3:156878358-156878366 chr3:156878061-156878070 chr3:156878013-156878022 chr3:156878358-156878366 chr3:156877318-156877328
46	JUN	chr3:156877416-156879209	K562	blood:	n/a	chr3:156878014-156878023 chr3:156878630-156878642 chr3:156878013-156878026
47	NR2F2	chr3:156877000-156879008	MCF-7	breast:	n/a	n/a
48	YY1	chr3:156877054-156878278	H1-hESC	embryonic stem cell:	n/a	chr3:156877370-156877379 chr3:156877323-156877332 chr3:156878064-156878073 chr3:156877327-156877349 chr3:156878059-156878073 chr3:156877318-156877332 chr3:156878065-156878079 chr3:156877327-156877337 chr3:156877367-156877376 chr3:156877315-156877329 chr3:156877365-156877379 chr3:156877330-156877338 chr3:156877370-156877381 chr3:156877367-156877378 chr3:156877327-156877337
49	MAZ	chr3:156877141-156878736	K562	blood:	n/a	chr3:156877996-156878005
50	POLR2A	chr3:156876730-156879055	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:156877271..156878729-chr3:156891908..156893288,13	MCF-7	breast:
2	chr17:26925921..26926595-chr3:156877518..156878198,2	Hela-S3	cervix:
3	chr3:156877450..156878143-chr6:26124036..26124672,2	Hela-S3	cervix:
4	chr3:156270417..156272669-chr3:156876892..156879496,3	MCF-7	breast:
5	chr3:156877504..156878535-chr4:2010640..2011564,3	Hela-S3	cervix:
6	chr19:46195663..46196345-chr3:156877465..156878400,2	Hela-S3	cervix:
7	chr3:156877523..156878545-chr3:156892549..156893305,3	K562	blood:
8	chr3:156877528..156878270-chrX:47441431..47441972,2	Hela-S3	cervix:
9	chr3:156877508..156878255-chr6:107780540..107781376,2	NB4	blood:
10	chr10:89101853..89102640-chr3:156877460..156878212,2	Hela-S3	cervix:
11	chr3:156806442..156808690-chr3:156876399..156878751,3	K562	blood:
12	chr3:156533151..156536166-chr3:156876536..156878958,4	MCF-7	breast:
13	chr3:156877524..156878365-chr7:135661681..135662484,2	Hela-S3	cervix:
14	chr3:156876906..156878652-chr5:112849281..112850980,2	MCF-7	breast:
15	chr3:156390967..156393612-chr3:156877452..156879722,5	K562	blood:
16	chr3:156271311..156273163-chr3:156875258..156877901,2	MCF-7	breast:
17	chr3:156877426..156878618-chr5:7868821..7869708,4	Hela-S3	cervix:
18	chr20:47537882..47538727-chr3:156877527..156878360,2	Hela-S3	cervix:
19	chr3:156533566..156537799-chr3:156875553..156879495,5	MCF-7	breast:
20	chr3:156270403..156273229-chr3:156876136..156878579,3	K562	blood:
21	chr3:156877079..156878844-chr3:156892396..156893424,14	MCF-7	breast:
22	chr3:156391251..156395598-chr3:156875832..156879722,8	K562	blood:
23	chr3:156877457..156878033-chr7:100230361..100231153,2	Hela-S3	cervix:
24	chr3:156542707..156546513-chr3:156875626..156880471,4	K562	blood:
25	chr3:156877312..156878829-chr3:157215828..157217398,2	MCF-7	breast:
26	chr19:14116306..14117077-chr3:156877017..156877934,2	Hela-S3	cervix:
27	chr17:27621064..27621645-chr3:156877461..156878130,2	Hela-S3	cervix:
28	chr3:156877461..156878016-chr6:159290219..159291163,2	Hela-S3	cervix:
29	chr3:156390449..156395705-chr3:156876136..156879645,10	MCF-7	breast:
30	chr3:156877302..156878206-chr6:10414942..10415687,2	Hela-S3	cervix:
31	chr3:156876658..156879378-chr3:156891661..156893506,34	Hela-S3	cervix:

Variant related genes	Relation type
CCNL1	TF binding region
ENSG00000241770	TF binding region
ENSG00000102265	Chromatin interaction
ENSG00000180573	Chromatin interaction
ENSG00000241135	Chromatin interaction
ENSG00000137203	Chromatin interaction
ENSG00000114850	Chromatin interaction
ENSG00000163659	Chromatin interaction
ENSG00000222675	Chromatin interaction
ENSG00000224914	Chromatin interaction
ENSG00000223482	Chromatin interaction
ENSG00000243926	Chromatin interaction
ENSG00000132005	Chromatin interaction
ENSG00000108256	Chromatin interaction
ENSG00000047188	Chromatin interaction
ENSG00000125743	Chromatin interaction
ENSG00000180596	Chromatin interaction
ENSG00000164494	Chromatin interaction
ENSG00000197980	Chromatin interaction
ENSG00000106327	Chromatin interaction
ENSG00000197415	Chromatin interaction
ENSG00000124198	Chromatin interaction
ENSG00000243176	Chromatin interaction
ENSG00000185049	Chromatin interaction
ENSG00000227543	Chromatin interaction
ENSG00000105887	Chromatin interaction
ENSG00000124275	Chromatin interaction
ENSG00000011478	Chromatin interaction
ENSG00000124279	Chromatin interaction
ENSG00000203711	Chromatin interaction
ENSG00000076382	Chromatin interaction
ENSG00000240875	Chromatin interaction

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10936061	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10936062	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10936063	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10936064	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10936065	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10936066	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10936067	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10936068	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10936069	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10936074	0.92[EUR][1000 genomes]
rs10936075	0.81[EUR][1000 genomes]
rs12488480	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12489453	0.93[EUR][1000 genomes]
rs12489799	0.94[EUR][1000 genomes]
rs12490836	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12492801	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12496051	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12496111	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12497891	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12630209	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12633429	0.81[EUR][1000 genomes]
rs12634818	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12636125	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16827318	0.93[EUR][1000 genomes]
rs16827352	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17552941	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1995304	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2321740	0.86[EUR][1000 genomes]
rs35910014	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3935750	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41272613	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4371471	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4383467	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4413278	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4608646	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4679788	0.93[EUR][1000 genomes]
rs4680340	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4680343	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680345	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680349	0.84[EUR][1000 genomes]
rs5003893	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55828309	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55835412	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55949516	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55953639	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56078410	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56263456	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57322659	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57511361	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59210914	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59279023	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59485606	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59865540	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60153077	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61149035	0.90[AFR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62274129	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62274155	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62274156	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62274159	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276460	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276461	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276462	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62276465	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62276470	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62276471	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62276474	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62276475	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62276479	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62276480	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62276488	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62276489	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62276490	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62276491	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62276495	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62276496	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62276497	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62276501	0.94[EUR][1000 genomes]
rs62276502	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62276504	0.93[EUR][1000 genomes]
rs62276505	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6441115	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441116	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441119	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6768052	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6768074	0.92[EUR][1000 genomes]
rs6777922	0.82[AFR][1000 genomes]
rs6780205	0.92[EUR][1000 genomes]
rs6781682	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6792479	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6805989	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6806232	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6809307	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73154633	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73154649	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73154657	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73154659	0.93[EUR][1000 genomes]
rs73154671	0.85[EUR][1000 genomes]
rs73154682	0.83[EUR][1000 genomes]
rs73873800	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7610214	0.81[EUR][1000 genomes]
rs7621912	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7626589	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7633004	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7648599	0.94[EUR][1000 genomes]
rs7652298	0.83[EUR][1000 genomes]
rs8180056	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8180057	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8925	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs949854	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
2	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv520331	chr3:156858300-156915650	Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156871800-156879200	Active TSS	Right Ventricle	heart
2	chr3:156872000-156877800	Active TSS	Right Atrium	heart
3	chr3:156872000-156878600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
4	chr3:156872200-156879000	Transcr. at gene 5' and 3'	Duodenum Smooth Muscle	Duodenum
5	chr3:156872400-156879200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:156872600-156877800	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
7	chr3:156873800-156877800	Transcr. at gene 5' and 3'	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr3:156874200-156877800	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
9	chr3:156874800-156879000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr3:156875000-156879000	Active TSS	Psoas Muscle	Psoas
11	chr3:156875400-156878800	Active TSS	Ovary	ovary
12	chr3:156875800-156879000	Active TSS	Left Ventricle	heart
13	chr3:156876000-156877800	Active TSS	Aorta	Aorta
14	chr3:156876000-156878400	Active TSS	Fetal Brain Female	brain
15	chr3:156876000-156878800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr3:156876200-156879000	Active TSS	Small Intestine	intestine
17	chr3:156876400-156878800	Active TSS	Fetal Intestine Small	intestine
18	chr3:156876400-156878800	Active TSS	Stomach Mucosa	stomach
19	chr3:156876400-156879000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr3:156876600-156878000	Active TSS	Colonic Mucosa	Colon
21	chr3:156876600-156878600	Active TSS	Lung	lung
22	chr3:156876600-156878600	Active TSS	Sigmoid Colon	Sigmoid Colon
23	chr3:156876600-156878800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr3:156876600-156878800	Bivalent/Poised TSS	HepG2	liver
25	chr3:156876600-156879000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
26	chr3:156876600-156879000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
27	chr3:156876600-156879000	Active TSS	Fetal Brain Male	brain
28	chr3:156876600-156879200	Active TSS	Fetal Muscle Trunk	muscle
29	chr3:156876800-156878200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr3:156876800-156878200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
31	chr3:156876800-156878200	Active TSS	HUVEC	blood vessel
32	chr3:156876800-156878400	Active TSS	Fetal Thymus	thymus
33	chr3:156876800-156878600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr3:156876800-156878600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr3:156876800-156878600	Active TSS	Adipose Nuclei	Adipose
36	chr3:156876800-156878600	Active TSS	Fetal Muscle Leg	muscle
37	chr3:156876800-156878800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr3:156876800-156878800	Active TSS	iPS-15b Cell Line	embryonic stem cell
39	chr3:156876800-156878800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
40	chr3:156876800-156878800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr3:156876800-156878800	Active TSS	Brain Angular Gyrus	brain
42	chr3:156876800-156878800	Active TSS	Brain Hippocampus Middle	brain
43	chr3:156876800-156878800	Active TSS	Fetal Intestine Large	intestine
44	chr3:156876800-156878800	Active TSS	Fetal Stomach	stomach
45	chr3:156876800-156878800	Active TSS	Stomach Smooth Muscle	stomach
46	chr3:156876800-156878800	Active TSS	Thymus	Thymus
47	chr3:156876800-156878800	Active TSS	NHLF	lung
48	chr3:156876800-156879000	Active TSS	H9 Cell Line	embryonic stem cell
49	chr3:156876800-156879200	Active TSS	ES-I3 Cell Line	embryonic stem cell
50	chr3:156877000-156878000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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