Variant report

Variant	rs2321740
Chromosome Location	chr3:156929054-156929055
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156928672..156931492-chr3:157212092..157213882,2	MCF-7	breast:
2	chr3:156914056..156915749-chr3:156927497..156930376,2	K562	blood:

Variant related genes	Relation type
ENSG00000197415	Chromatin interaction

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10936061	0.86[EUR][1000 genomes]
rs10936062	0.86[EUR][1000 genomes]
rs10936063	0.86[EUR][1000 genomes]
rs10936064	0.86[EUR][1000 genomes]
rs10936065	0.86[EUR][1000 genomes]
rs10936066	0.86[EUR][1000 genomes]
rs10936067	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10936068	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10936069	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10936074	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1157738	0.83[AMR][1000 genomes]
rs12488480	0.88[EUR][1000 genomes]
rs12489453	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12489799	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12490836	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12492801	0.86[EUR][1000 genomes]
rs12496051	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12496111	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12497891	0.88[EUR][1000 genomes]
rs12630209	0.86[EUR][1000 genomes]
rs12634818	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12635088	0.86[EUR][1000 genomes]
rs12636125	0.84[EUR][1000 genomes]
rs16827318	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16827322	0.83[AMR][1000 genomes]
rs16827352	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17552941	0.86[EUR][1000 genomes]
rs1995304	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35910014	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3935750	0.88[EUR][1000 genomes]
rs41272613	0.86[EUR][1000 genomes]
rs4371471	0.85[EUR][1000 genomes]
rs4383467	0.86[EUR][1000 genomes]
rs4413278	0.88[EUR][1000 genomes]
rs4608646	0.86[EUR][1000 genomes]
rs4679788	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4680340	0.82[EUR][1000 genomes]
rs4680343	0.88[EUR][1000 genomes]
rs4680345	0.88[EUR][1000 genomes]
rs4680347	0.83[AMR][1000 genomes]
rs5003893	0.86[EUR][1000 genomes]
rs55828309	0.88[EUR][1000 genomes]
rs55835412	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55949516	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55953639	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56078410	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56263456	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57322659	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57511361	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59210914	0.84[EUR][1000 genomes]
rs59279023	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59485606	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59865540	0.81[EUR][1000 genomes]
rs60153077	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61149035	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62274129	0.83[EUR][1000 genomes]
rs62274155	0.86[EUR][1000 genomes]
rs62274156	0.86[EUR][1000 genomes]
rs62274159	0.88[EUR][1000 genomes]
rs62276460	0.88[EUR][1000 genomes]
rs62276461	0.88[EUR][1000 genomes]
rs62276462	0.88[EUR][1000 genomes]
rs62276465	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62276470	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62276471	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62276474	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62276475	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62276479	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62276480	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62276488	0.82[AMR][1000 genomes]
rs62276489	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62276490	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62276491	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62276495	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62276496	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62276497	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62276501	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62276502	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62276504	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62276505	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6441115	0.86[EUR][1000 genomes]
rs6441116	0.86[EUR][1000 genomes]
rs6441119	0.88[EUR][1000 genomes]
rs6768052	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6768074	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6780205	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6781682	0.88[EUR][1000 genomes]
rs6792479	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6805989	0.88[EUR][1000 genomes]
rs6806232	0.88[EUR][1000 genomes]
rs6809307	0.82[EUR][1000 genomes]
rs73154633	0.85[EUR][1000 genomes]
rs73154649	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73154657	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73154659	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73154682	0.81[AMR][1000 genomes]
rs73873800	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7621912	0.88[EUR][1000 genomes]
rs7626589	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7633004	0.86[EUR][1000 genomes]
rs7648599	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7652298	0.81[AMR][1000 genomes]
rs8180056	0.86[EUR][1000 genomes]
rs8180057	0.87[EUR][1000 genomes]
rs8925	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156920200-156929600	Weak transcription	Primary B cells from peripheral blood	blood
2	chr3:156924400-156934000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr3:156925000-156929200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:156927600-156934400	Weak transcription	Primary T cells from cord blood	blood

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