Variant report

Variant	rs73154682
Chromosome Location	chr3:156982235-156982236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156974074..156978072-chr3:156979844..156983022,4	K562	blood:

Extended variants
information (count: 141 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:139)

rs_ID	r²[population]
rs10460861	0.81[AMR][1000 genomes]
rs10513508	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10936061	0.83[EUR][1000 genomes]
rs10936062	0.83[EUR][1000 genomes]
rs10936063	0.82[EUR][1000 genomes]
rs10936064	0.82[EUR][1000 genomes]
rs10936065	0.82[EUR][1000 genomes]
rs10936066	0.82[EUR][1000 genomes]
rs10936067	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10936068	0.86[EUR][1000 genomes]
rs10936069	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10936074	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10936075	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10936078	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10936080	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10936081	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12488480	0.84[EUR][1000 genomes]
rs12489453	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12489799	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12490836	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12492801	0.83[EUR][1000 genomes]
rs12493531	0.87[AMR][1000 genomes]
rs12496051	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12496111	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12497891	0.84[EUR][1000 genomes]
rs12629589	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12630209	0.82[EUR][1000 genomes]
rs12632525	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12632562	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12633429	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12634818	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12635088	0.83[EUR][1000 genomes]
rs12635316	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12636125	0.80[EUR][1000 genomes]
rs1403104	0.85[AMR][1000 genomes]
rs1403106	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1403108	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1500924	0.86[AMR][1000 genomes]
rs1522392	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs1568611	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16827318	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16827352	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16827483	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs17552941	0.83[EUR][1000 genomes]
rs1995304	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2047648	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2321740	0.81[AMR][1000 genomes]
rs2321742	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2874616	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35910014	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3935750	0.84[EUR][1000 genomes]
rs41272613	0.83[EUR][1000 genomes]
rs4371471	0.82[EUR][1000 genomes]
rs4383467	0.82[EUR][1000 genomes]
rs4413278	0.84[EUR][1000 genomes]
rs4608646	0.82[EUR][1000 genomes]
rs4679788	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4679789	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4680343	0.84[EUR][1000 genomes]
rs4680345	0.84[EUR][1000 genomes]
rs4680349	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4680352	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4680354	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs5003893	0.83[EUR][1000 genomes]
rs55828309	0.84[EUR][1000 genomes]
rs55835412	0.86[EUR][1000 genomes]
rs55949516	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55953639	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56078410	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56143236	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56150358	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56263456	0.86[EUR][1000 genomes]
rs56313302	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs57322659	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57511361	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59210914	0.80[EUR][1000 genomes]
rs59279023	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59485606	0.84[EUR][1000 genomes]
rs60153077	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61149035	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62274155	0.82[EUR][1000 genomes]
rs62274156	0.82[EUR][1000 genomes]
rs62274159	0.84[EUR][1000 genomes]
rs62276460	0.84[EUR][1000 genomes]
rs62276461	0.84[EUR][1000 genomes]
rs62276462	0.84[EUR][1000 genomes]
rs62276465	0.85[EUR][1000 genomes]
rs62276470	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62276471	0.86[EUR][1000 genomes]
rs62276474	0.86[EUR][1000 genomes]
rs62276475	0.86[EUR][1000 genomes]
rs62276479	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62276480	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62276489	0.86[EUR][1000 genomes]
rs62276490	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62276491	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62276495	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62276496	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62276497	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62276501	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62276502	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62276504	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62276505	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62276528	0.87[AMR][1000 genomes]
rs62278575	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs62281377	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs62281379	0.86[AMR][1000 genomes]
rs62281383	0.86[AMR][1000 genomes]
rs6441115	0.83[EUR][1000 genomes]
rs6441116	0.83[EUR][1000 genomes]
rs6441119	0.84[EUR][1000 genomes]
rs6768052	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6768074	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6780205	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6781682	0.84[EUR][1000 genomes]
rs6792479	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6799567	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6805989	0.84[EUR][1000 genomes]
rs6806232	0.84[EUR][1000 genomes]
rs73154633	0.82[EUR][1000 genomes]
rs73154649	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73154657	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73154659	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73154671	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73873800	0.85[EUR][1000 genomes]
rs7610214	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7619892	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7621912	0.84[EUR][1000 genomes]
rs7626589	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7631257	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7633004	0.83[EUR][1000 genomes]
rs7648599	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7649737	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7652298	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8180056	0.83[EUR][1000 genomes]
rs8180057	0.84[EUR][1000 genomes]
rs8925	0.82[EUR][1000 genomes]
rs924516	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs949854	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156967200-156989000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:156967200-157000000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:156967200-157000000	Weak transcription	NH-A	brain
4	chr3:156967200-157007800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:156974000-156982400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr3:156979600-156997000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:156980400-156982400	Enhancers	HUVEC	blood vessel
8	chr3:156981000-156983600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:156981200-156991400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:156981600-156991000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr3:156981800-156982400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:156982000-156982400	Genic enhancers	Osteobl	bone
13	chr3:156982200-156982600	Weak transcription	Lung	lung

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