Variant report

Variant	rs12632562
Chromosome Location	chr3:156999047-156999048
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156997473..157000192-chr3:157001265..157003413,2	K562	blood:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10460861	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10513508	0.86[CEU][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10755111	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs10936063	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs10936066	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs10936075	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10936077	0.84[CHB][hapmap]
rs10936078	0.83[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10936080	0.87[CEU][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10936081	0.87[CEU][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1157738	0.81[CEU][hapmap]
rs12488480	1.00[CEU][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap]
rs12490120	0.95[CHB][hapmap]
rs12492801	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs12495519	0.85[EUR][1000 genomes]
rs12496111	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs12629589	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12632525	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12633429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12635316	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12636125	0.89[JPT][hapmap];1.00[YRI][hapmap]
rs1403104	0.82[CEU][hapmap]
rs1403105	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs1403106	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1403108	0.86[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1403109	0.95[CHB][hapmap]
rs1500922	0.83[JPT][hapmap]
rs1500924	0.87[CEU][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1522392	0.86[CEU][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1546260	0.95[CHB][hapmap]
rs1568611	0.86[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16827308	0.83[CEU][hapmap]
rs16827322	0.82[CEU][hapmap]
rs16827483	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1995304	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs2047648	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2173824	0.83[JPT][hapmap]
rs2321742	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2321743	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs2874616	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3935750	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs4679788	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs4679789	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4679790	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs4679791	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs4680340	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs4680343	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs4680345	1.00[CEU][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap]
rs4680347	0.80[CEU][hapmap]
rs4680349	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4680352	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4680353	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs4680354	0.86[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs5003893	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs56143236	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56150358	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56313302	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62278575	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62281377	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62281379	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62281383	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6441115	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs6441116	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs6768074	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs6781682	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs6788214	1.00[CEU][hapmap]
rs6799567	0.86[CEU][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6805989	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs6809307	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs73154671	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73154682	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7610214	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7619892	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7621912	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs7631257	0.87[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7648599	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs7649737	0.87[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7652298	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8925	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs924516	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs949854	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156967200-157000000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:156967200-157000000	Weak transcription	NH-A	brain
3	chr3:156967200-157007800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:156988000-157005800	Weak transcription	Pancreas	Pancrea
5	chr3:156989400-156999800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:156992600-157000200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:156994000-157000000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:156997000-157000400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:156997000-157001000	Enhancers	Osteobl	bone
10	chr3:156997000-157004400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:156997400-156999600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr3:156997600-157003600	Weak transcription	K562	blood
13	chr3:156997800-156999800	Enhancers	NHDF-Ad	bronchial
14	chr3:156998000-156999200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:156998000-157000600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr3:156998200-157000400	Enhancers	HUVEC	blood vessel
17	chr3:156998400-157001800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:156998600-156999200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:156998800-157000400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:156998800-157002000	Enhancers	NHLF	lung
21	chr3:156998800-157006000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr3:156999000-156999600	Weak transcription	HSMM	muscle
23	chr3:156999000-157000200	Weak transcription	Brain Anterior Caudate	brain
24	chr3:156999000-157000400	Weak transcription	Adipose Nuclei	Adipose

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