Variant report

Variant	rs56313302
Chromosome Location	chr3:157036168-157036169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:157034317..157036737-chr3:157259536..157261950,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174899	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10460861	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10513508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10513509	0.96[ASN][1000 genomes]
rs10513510	0.80[ASN][1000 genomes]
rs10513512	0.80[ASN][1000 genomes]
rs10804778	0.96[ASN][1000 genomes]
rs10936075	0.83[AMR][1000 genomes]
rs10936078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10936080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10936081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10936083	0.96[ASN][1000 genomes]
rs11918974	0.96[ASN][1000 genomes]
rs12490192	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12494465	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12495519	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12496269	0.91[ASN][1000 genomes]
rs12629589	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12632525	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12632562	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12633429	0.83[AMR][1000 genomes]
rs12634054	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12634689	0.96[ASN][1000 genomes]
rs12635316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12637476	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1403106	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1403108	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1474281	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1500917	0.96[ASN][1000 genomes]
rs1500918	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1500922	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1500924	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1522392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1568611	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16827483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16827516	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs16827530	0.96[ASN][1000 genomes]
rs1875315	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2047648	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2047650	0.90[ASN][1000 genomes]
rs2173824	0.96[ASN][1000 genomes]
rs2321742	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2874616	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4679789	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4680349	0.86[AMR][1000 genomes]
rs4680352	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4680354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55865575	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs56143236	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56150358	0.83[AMR][1000 genomes]
rs62278575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62278582	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs62278583	0.80[ASN][1000 genomes]
rs62278584	0.96[ASN][1000 genomes]
rs62278585	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs62278586	0.96[ASN][1000 genomes]
rs62278596	0.94[ASN][1000 genomes]
rs62278597	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs62278598	0.96[ASN][1000 genomes]
rs62278601	0.88[ASN][1000 genomes]
rs62278603	0.88[ASN][1000 genomes]
rs62281377	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62281379	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62281383	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6799567	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73154671	0.85[AMR][1000 genomes]
rs73154682	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs73156752	0.80[ASN][1000 genomes]
rs73156756	0.96[ASN][1000 genomes]
rs73156757	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs73156759	0.90[ASN][1000 genomes]
rs7610214	0.88[AMR][1000 genomes]
rs7619892	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7631257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7649737	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7652298	0.86[AMR][1000 genomes]
rs924516	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs949854	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157015600-157048400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:157030400-157036200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:157030600-157047000	Weak transcription	Osteobl	bone
4	chr3:157031400-157037400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:157031800-157039200	Weak transcription	HUVEC	blood vessel
6	chr3:157035400-157036200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:157035400-157036800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:157035400-157036800	Enhancers	A549	lung
9	chr3:157035600-157036800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:157036000-157047800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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