Variant report

Variant	rs10804778
Chromosome Location	chr3:157077835-157077836
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10460861	0.81[ASN][1000 genomes]
rs10513508	0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs10513509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10513510	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10513512	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10936077	0.87[CHB][hapmap]
rs10936078	0.95[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs10936080	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs10936081	0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs10936083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10936088	0.82[CHB][hapmap]
rs10936089	0.82[CHB][hapmap]
rs11918974	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12490192	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12494465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12495519	0.89[ASN][1000 genomes]
rs12496269	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12634054	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12634689	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12635316	0.96[ASN][1000 genomes]
rs12637476	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1403106	0.82[CHB][hapmap]
rs1403108	0.87[CHB][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap];0.85[ASN][1000 genomes]
rs1456109	0.82[CHB][hapmap]
rs1474281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1500917	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1500918	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1500922	0.95[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1500924	0.95[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs1522392	0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs1568611	0.87[CHB][hapmap];0.88[JPT][hapmap];0.85[YRI][hapmap];0.85[ASN][1000 genomes]
rs1587533	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16827483	0.96[ASN][1000 genomes]
rs16827516	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16827530	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1875315	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2047648	0.95[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs2047650	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2173824	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2321742	0.84[ASN][1000 genomes]
rs2874616	0.82[CHB][hapmap]
rs4680352	0.82[CHB][hapmap];0.85[YRI][hapmap]
rs4680354	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs55865575	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56143236	0.92[ASN][1000 genomes]
rs56313302	0.96[ASN][1000 genomes]
rs62278575	0.96[ASN][1000 genomes]
rs62278582	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62278583	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62278584	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62278585	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62278586	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62278596	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62278597	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62278598	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62278601	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62278603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62281377	0.96[ASN][1000 genomes]
rs62281379	0.96[ASN][1000 genomes]
rs62281383	0.96[ASN][1000 genomes]
rs6799567	0.95[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs73156752	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73156753	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73156756	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156757	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73156759	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7631257	0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs7649737	0.87[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs7652298	0.82[CHB][hapmap]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157066000-157086800	Weak transcription	Pancreas	Pancrea
2	chr3:157066600-157083200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:157073400-157079800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:157075800-157078600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:157075800-157078800	Enhancers	NHEK	skin
6	chr3:157076000-157078800	Enhancers	NH-A	brain
7	chr3:157076400-157079600	Enhancers	Osteobl	bone
8	chr3:157076600-157078800	Enhancers	NHLF	lung
9	chr3:157076600-157079000	Enhancers	Hela-S3	cervix
10	chr3:157076600-157079600	Enhancers	NHDF-Ad	bronchial
11	chr3:157076800-157079400	Enhancers	HSMM	muscle
12	chr3:157077000-157078000	Enhancers	HSMMtube	muscle
13	chr3:157077000-157078600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:157077200-157078200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:157077200-157078600	Flanking Active TSS	A549	lung
16	chr3:157077200-157079400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:157077200-157081000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:157077400-157078000	Flanking Active TSS	HUVEC	blood vessel
19	chr3:157077600-157083400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:157077800-157078200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:157077800-157078200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:157077800-157078200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:157077800-157078200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr3:157077800-157078200	Enhancers	Muscle Satellite Cultured Cells	--
25	chr3:157077800-157078400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:157077800-157078800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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