Variant report

Variant	rs1456109
Chromosome Location	chr3:157108545-157108546
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1014855	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10513508	0.81[CHB][hapmap]
rs10513509	0.81[CHB][hapmap]
rs10513510	0.81[CHB][hapmap]
rs10513512	0.85[CHB][hapmap]
rs1074864	0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10755111	0.85[JPT][hapmap]
rs10804778	0.82[CHB][hapmap]
rs10936077	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs10936078	0.82[CHB][hapmap]
rs10936080	0.82[CHB][hapmap]
rs10936081	0.82[CHB][hapmap]
rs10936088	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10936089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12494465	0.81[CHB][hapmap]
rs12634054	0.82[CHB][hapmap]
rs12634689	0.82[CHB][hapmap]
rs12637476	0.85[CHB][hapmap]
rs1403105	0.85[JPT][hapmap]
rs1456104	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1474281	0.82[CHB][hapmap]
rs1500918	0.81[CHB][hapmap]
rs1500924	0.82[CHB][hapmap]
rs1522392	0.81[CHB][hapmap]
rs2047648	0.81[CHB][hapmap]
rs2173824	0.81[CHB][hapmap]
rs2316712	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2321743	0.85[JPT][hapmap]
rs3911402	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4679790	0.85[JPT][hapmap]
rs4679791	0.86[JPT][hapmap]
rs4680353	0.85[JPT][hapmap]
rs4680354	0.80[CHB][hapmap]
rs6799567	0.81[CHB][hapmap]
rs722485	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7631257	0.82[CHB][hapmap]
rs9831686	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9837655	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9848774	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157088000-157108600	Weak transcription	Lung	lung
2	chr3:157091800-157108600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:157091800-157142600	Weak transcription	Pancreas	Pancrea
4	chr3:157104600-157108600	Weak transcription	Ovary	ovary
5	chr3:157105200-157109200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:157106400-157108600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:157106400-157108600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:157106800-157108600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:157107200-157108600	Weak transcription	NHEK	skin
10	chr3:157107200-157109000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:157107200-157111000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:157107200-157119000	Weak transcription	Fetal Lung	lung
13	chr3:157107400-157108600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:157107400-157109000	Weak transcription	Osteobl	bone
15	chr3:157107400-157128000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:157107800-157108600	Weak transcription	NHLF	lung
17	chr3:157107800-157123000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr3:157108000-157115000	Weak transcription	HUVEC	blood vessel
19	chr3:157108400-157109000	ZNF genes & repeats	Aorta	Aorta
20	chr3:157108400-157109200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:157108400-157109400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:157108400-157109400	Enhancers	NHDF-Ad	bronchial

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