Variant report

Variant	rs3911402
Chromosome Location	chr3:157098497-157098498
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1014855	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1074864	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10936088	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10936089	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1456104	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1456109	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2316712	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs722485	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9831686	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9837655	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9848774	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157078200-157102400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:157083600-157105800	Weak transcription	HSMM	muscle
3	chr3:157088000-157108600	Weak transcription	Lung	lung
4	chr3:157088600-157105400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr3:157091800-157108600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:157091800-157142600	Weak transcription	Pancreas	Pancrea
7	chr3:157094200-157106000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:157094200-157106000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:157094200-157106200	Weak transcription	NH-A	brain
10	chr3:157095000-157101200	Weak transcription	Fetal Brain Male	brain
11	chr3:157095000-157101400	Weak transcription	Fetal Lung	lung
12	chr3:157095000-157105200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr3:157095000-157105400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:157095200-157106600	Weak transcription	Osteobl	bone
15	chr3:157095800-157099200	Strong transcription	HUVEC	blood vessel
16	chr3:157096400-157100200	Enhancers	NHDF-Ad	bronchial
17	chr3:157096600-157099600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr3:157097800-157099200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr3:157098200-157100200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:157098200-157105200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:157098400-157101400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr3:157098400-157101800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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