Variant report

Variant	rs4680354
Chromosome Location	chr3:157041351-157041352
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10460861	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10513508	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10513509	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10513510	0.90[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs10513512	0.90[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs10804778	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs10936063	0.90[CEU][hapmap]
rs10936066	0.90[CEU][hapmap]
rs10936075	0.83[AMR][1000 genomes]
rs10936077	0.90[CHB][hapmap]
rs10936078	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10936080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10936081	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10936083	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10936089	0.80[CHB][hapmap]
rs1157738	0.82[CEU][hapmap]
rs11918974	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12488480	0.90[CEU][hapmap]
rs12490120	0.81[CHB][hapmap]
rs12490192	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12492801	0.90[CEU][hapmap]
rs12494465	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12495519	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12496111	0.90[CEU][hapmap]
rs12496269	0.91[ASN][1000 genomes]
rs12629589	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12632525	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12632562	0.86[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12633429	0.90[CEU][hapmap];0.83[AMR][1000 genomes]
rs12634054	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12634689	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs12635316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12637476	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1403106	0.90[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1403108	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1403109	0.82[CHB][hapmap]
rs1456109	0.80[CHB][hapmap]
rs1474281	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1500917	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1500918	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1500922	0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1500924	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1522392	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1546260	0.81[CHB][hapmap]
rs1568611	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16827483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16827516	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs16827530	0.96[ASN][1000 genomes]
rs1875315	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1995304	0.90[CEU][hapmap]
rs2047648	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2047650	0.94[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs2173824	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2321742	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2874616	0.90[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3935750	0.90[CEU][hapmap]
rs4679788	0.93[CEU][hapmap]
rs4679789	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4680340	0.90[CEU][hapmap]
rs4680343	0.90[CEU][hapmap]
rs4680345	0.90[CEU][hapmap]
rs4680349	0.86[AMR][1000 genomes]
rs4680352	0.90[CEU][hapmap];0.85[CHB][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs5003893	0.90[CEU][hapmap]
rs55865575	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs56143236	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56150358	0.83[AMR][1000 genomes]
rs56313302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62278575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62278582	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs62278583	0.80[ASN][1000 genomes]
rs62278584	0.96[ASN][1000 genomes]
rs62278585	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs62278586	0.96[ASN][1000 genomes]
rs62278596	0.94[ASN][1000 genomes]
rs62278597	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs62278598	0.96[ASN][1000 genomes]
rs62278601	0.88[ASN][1000 genomes]
rs62278603	0.88[ASN][1000 genomes]
rs62281377	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62281379	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62281383	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441115	0.90[CEU][hapmap]
rs6441116	0.90[CEU][hapmap]
rs6768074	0.91[CEU][hapmap];0.83[CHB][hapmap]
rs6781682	0.86[CEU][hapmap]
rs6788214	0.88[CEU][hapmap]
rs6799567	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6805989	0.90[CEU][hapmap]
rs6809307	0.90[CEU][hapmap]
rs73154671	0.85[AMR][1000 genomes]
rs73154682	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs73156752	0.80[ASN][1000 genomes]
rs73156756	0.96[ASN][1000 genomes]
rs73156757	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs73156759	0.90[ASN][1000 genomes]
rs7610214	0.88[AMR][1000 genomes]
rs7619892	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7621912	0.91[CEU][hapmap]
rs7631257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7648599	0.90[CEU][hapmap]
rs7649737	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7652298	0.91[CEU][hapmap];0.85[CHB][hapmap];0.86[AMR][1000 genomes]
rs8925	0.90[CEU][hapmap]
rs924516	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs949854	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157015600-157048400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:157030600-157047000	Weak transcription	Osteobl	bone
3	chr3:157036000-157047800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:157036800-157053000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:157039800-157051000	Weak transcription	HUVEC	blood vessel
6	chr3:157041000-157065600	Weak transcription	Pancreas	Pancrea
7	chr3:157041200-157041600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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