Variant report

Variant	rs62278582
Chromosome Location	chr3:157065770-157065771
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156876462..156878944-chr3:157065640..157068147,2	K562	blood:

Variant related genes	Relation type
ENSG00000163660	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10460861	0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10513508	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10513509	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10513510	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10513512	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10804778	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10936078	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10936080	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10936081	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10936083	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11918974	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12490192	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12494465	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12495519	0.89[ASN][1000 genomes]
rs12496269	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12634054	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12634689	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12635316	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12637476	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1403108	0.85[ASN][1000 genomes]
rs1474281	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1500917	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1500918	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1500922	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1500924	0.90[ASN][1000 genomes]
rs1522392	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1568611	0.85[ASN][1000 genomes]
rs1587533	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16827483	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs16827516	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16827530	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1875315	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2047648	0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2047650	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2173824	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2321742	0.84[ASN][1000 genomes]
rs4680354	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs55865575	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56143236	0.92[ASN][1000 genomes]
rs56313302	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs62278575	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs62278583	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62278584	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62278585	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62278586	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62278596	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62278597	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62278598	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62278601	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62278603	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62281377	0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs62281379	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs62281383	0.96[ASN][1000 genomes]
rs6799567	0.86[ASN][1000 genomes]
rs73156752	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73156753	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73156756	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156757	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73156759	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7631257	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7649737	0.84[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157056200-157072600	Weak transcription	HUVEC	blood vessel
2	chr3:157057000-157072800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:157064000-157066200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:157065200-157065800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:157065200-157066000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:157065200-157066000	ZNF genes & repeats	Aorta	Aorta
7	chr3:157065400-157065800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr3:157065400-157065800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr3:157065400-157066000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr3:157065400-157066000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr3:157065400-157066000	ZNF genes & repeats	HSMM	muscle
12	chr3:157065600-157066000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr3:157065600-157066000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr3:157065600-157066000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:157065600-157066000	ZNF genes & repeats	Pancreas	Pancrea
16	chr3:157065600-157066600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:157065600-157066800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr3:157065600-157066800	Enhancers	NHDF-Ad	bronchial
19	chr3:157065600-157066800	Enhancers	NHLF	lung
20	chr3:157065600-157068400	Enhancers	Osteobl	bone

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