Variant report

Variant	rs2047650
Chromosome Location	chr3:157085055-157085056
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10513508	0.89[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs10513509	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10513510	1.00[CEU][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10513512	1.00[CEU][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10804778	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10936078	1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs10936080	0.81[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs10936081	0.89[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs10936083	1.00[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11918974	1.00[CEU][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12490192	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12494465	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12495519	0.83[ASN][1000 genomes]
rs12496269	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12634054	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12634689	0.95[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12635316	0.90[ASN][1000 genomes]
rs12637476	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1403108	0.83[JPT][hapmap];0.82[YRI][hapmap]
rs1474281	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1500917	0.93[CEU][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1500918	0.81[CHB][hapmap];0.85[JPT][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1500922	0.95[CEU][hapmap];0.89[JPT][hapmap];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1500924	0.84[ASN][1000 genomes]
rs1522392	0.89[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs1568611	0.85[YRI][hapmap]
rs1587533	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16827483	0.90[ASN][1000 genomes]
rs16827516	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16827530	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1875315	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2047648	1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs2173824	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4680352	0.85[YRI][hapmap]
rs4680354	0.94[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs55865575	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56143236	0.86[ASN][1000 genomes]
rs56313302	0.90[ASN][1000 genomes]
rs62278575	0.90[ASN][1000 genomes]
rs62278582	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62278583	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62278584	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62278585	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62278586	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62278596	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62278597	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62278598	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62278601	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62278603	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62281377	0.90[ASN][1000 genomes]
rs62281379	0.90[ASN][1000 genomes]
rs62281383	0.90[ASN][1000 genomes]
rs73156752	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73156753	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73156756	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73156757	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73156759	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7631257	0.83[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157066000-157086800	Weak transcription	Pancreas	Pancrea
2	chr3:157078200-157102400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr3:157078800-157091600	Weak transcription	NH-A	brain
4	chr3:157079200-157087600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:157081600-157091600	Weak transcription	NHLF	lung
6	chr3:157081600-157093800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr3:157083600-157086800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:157083600-157086800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:157083600-157087000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:157083600-157087000	Weak transcription	A549	lung
11	chr3:157083600-157105800	Weak transcription	HSMM	muscle
12	chr3:157083800-157087000	Weak transcription	NHDF-Ad	bronchial
13	chr3:157083800-157087800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr3:157083800-157092800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:157083800-157093600	Weak transcription	Fetal Brain Male	brain
16	chr3:157084000-157085800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:157084000-157087000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:157084000-157087000	Weak transcription	HUVEC	blood vessel
19	chr3:157084200-157087000	Weak transcription	Osteobl	bone
20	chr3:157084600-157085400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:157084800-157086000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr3:157084800-157087200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:157085000-157085200	Weak transcription	Fetal Lung	lung
24	chr3:157085000-157091600	Weak transcription	Aorta	Aorta

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