Variant report

Variant	rs11918974
Chromosome Location	chr3:157081324-157081325
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10460861	0.81[ASN][1000 genomes]
rs10513508	0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs10513509	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10513510	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10513512	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10804778	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10936077	0.82[CHB][hapmap]
rs10936078	0.91[CHB][hapmap];0.82[JPT][hapmap];0.96[ASN][1000 genomes]
rs10936080	0.95[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs10936081	0.91[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs10936083	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12490192	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12494465	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12495519	0.89[ASN][1000 genomes]
rs12496269	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12634054	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12634689	0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12635316	0.96[ASN][1000 genomes]
rs12637476	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1403108	0.82[CHB][hapmap];0.88[CHD][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs1474281	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1500917	0.93[CEU][hapmap];0.85[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1500918	0.95[CHB][hapmap];0.90[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1500922	0.95[CEU][hapmap];0.81[CHB][hapmap];0.84[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1500924	0.91[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs1522392	0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.82[TSI][hapmap];0.96[ASN][1000 genomes]
rs1568611	0.82[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs1587533	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16827483	0.96[ASN][1000 genomes]
rs16827516	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16827530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1875315	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2047648	0.91[CHB][hapmap];0.84[JPT][hapmap];0.96[ASN][1000 genomes]
rs2047650	1.00[CEU][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2173824	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2321742	0.84[ASN][1000 genomes]
rs4680354	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs55865575	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56143236	0.92[ASN][1000 genomes]
rs56313302	0.96[ASN][1000 genomes]
rs62278575	0.96[ASN][1000 genomes]
rs62278582	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62278583	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62278584	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62278585	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62278586	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62278596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62278597	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62278598	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62278601	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62278603	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62281377	0.96[ASN][1000 genomes]
rs62281379	0.96[ASN][1000 genomes]
rs62281383	0.96[ASN][1000 genomes]
rs6799567	0.91[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];0.84[JPT][hapmap];0.82[TSI][hapmap];0.86[ASN][1000 genomes]
rs73156752	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73156753	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73156756	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156757	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73156759	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7631257	0.91[CHB][hapmap];0.89[JPT][hapmap];0.96[ASN][1000 genomes]
rs7649737	0.82[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11918974	PTX3	cis	parietal	SCAN
rs11918974	C3orf55	cis	parietal	SCAN
rs11918974	PTX3	cis	cerebellum	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157066000-157086800	Weak transcription	Pancreas	Pancrea
2	chr3:157066600-157083200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:157077600-157083400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:157078200-157083400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:157078200-157102400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr3:157078600-157083800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr3:157078800-157083600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:157078800-157091600	Weak transcription	NH-A	brain
9	chr3:157079200-157087600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:157079400-157081400	Weak transcription	HSMM	muscle
11	chr3:157079400-157082800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:157079400-157083000	Weak transcription	A549	lung
13	chr3:157079400-157083200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:157079600-157082200	Weak transcription	NHDF-Ad	bronchial
15	chr3:157079800-157081600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr3:157080200-157082000	Genic enhancers	HUVEC	blood vessel
17	chr3:157080400-157082600	Enhancers	Fetal Lung	lung
18	chr3:157080600-157081400	Genic enhancers	Osteobl	bone
19	chr3:157080600-157081600	Enhancers	NHLF	lung
20	chr3:157081000-157081600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:157081000-157081600	Enhancers	Fetal Stomach	stomach
22	chr3:157081000-157082400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr3:157081000-157083600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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