Variant report

Variant	rs62278583
Chromosome Location	chr3:157066159-157066160
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156876462..156878944-chr3:157065640..157068147,2	K562	blood:

Variant related genes	Relation type
ENSG00000163660	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10460861	0.95[ASN][1000 genomes]
rs10513508	0.80[ASN][1000 genomes]
rs10513509	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10513510	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10513512	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10804778	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10936077	0.81[ASN][1000 genomes]
rs10936078	0.80[ASN][1000 genomes]
rs10936080	0.80[ASN][1000 genomes]
rs10936081	0.80[ASN][1000 genomes]
rs10936083	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11918974	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12486155	0.81[ASN][1000 genomes]
rs12490192	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12494465	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12496269	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12634054	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12634689	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12635316	0.80[ASN][1000 genomes]
rs12637476	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1474281	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1500917	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1500918	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1500922	0.97[EUR][1000 genomes]
rs1522392	0.80[ASN][1000 genomes]
rs1587533	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16827483	0.80[ASN][1000 genomes]
rs16827516	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16827530	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1875315	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2047648	0.80[ASN][1000 genomes]
rs2047650	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2173824	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4680354	0.80[ASN][1000 genomes]
rs55865575	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56313302	0.80[ASN][1000 genomes]
rs62278575	0.80[ASN][1000 genomes]
rs62278582	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62278584	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62278585	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62278586	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62278596	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62278597	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62278598	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62278601	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62278603	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62281377	0.80[ASN][1000 genomes]
rs62281379	0.80[ASN][1000 genomes]
rs62281383	0.80[ASN][1000 genomes]
rs73156724	0.81[ASN][1000 genomes]
rs73156752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156753	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73156756	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73156757	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73156759	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7631257	0.80[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157056200-157072600	Weak transcription	HUVEC	blood vessel
2	chr3:157057000-157072800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:157064000-157066200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:157065600-157066600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:157065600-157066800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:157065600-157066800	Enhancers	NHDF-Ad	bronchial
7	chr3:157065600-157066800	Enhancers	NHLF	lung
8	chr3:157065600-157068400	Enhancers	Osteobl	bone
9	chr3:157065800-157066400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:157065800-157066600	Enhancers	NH-A	brain
11	chr3:157065800-157067000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:157066000-157066200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:157066000-157066400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:157066000-157073200	Weak transcription	HSMM	muscle
15	chr3:157066000-157076400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:157066000-157086800	Weak transcription	Pancreas	Pancrea

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