Variant report

Variant	rs12486155
Chromosome Location	chr3:157021212-157021213
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10460861	0.84[ASN][1000 genomes]
rs10513510	0.81[ASN][1000 genomes]
rs10513512	0.81[ASN][1000 genomes]
rs10755111	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10804777	0.83[AMR][1000 genomes]
rs10936077	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10936079	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12486955	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12490120	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12494423	0.83[EUR][1000 genomes]
rs12633099	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12634905	0.83[AMR][1000 genomes]
rs12636252	0.82[EUR][1000 genomes]
rs12637932	0.83[AMR][1000 genomes]
rs1403105	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1403109	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1500923	0.81[EUR][1000 genomes]
rs1522393	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1546260	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1566521	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1581413	0.82[EUR][1000 genomes]
rs2047647	0.83[AMR][1000 genomes]
rs2321743	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4679790	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4679791	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4680353	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55734537	0.84[AMR][1000 genomes]
rs62278583	0.81[ASN][1000 genomes]
rs62281378	0.82[EUR][1000 genomes]
rs73156724	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73156752	0.81[ASN][1000 genomes]
rs7642909	0.82[EUR][1000 genomes]
rs991083	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157004800-157028200	Weak transcription	HUVEC	blood vessel
2	chr3:157013000-157032600	Weak transcription	NH-A	brain
3	chr3:157015600-157048400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:157019000-157029000	Weak transcription	NHLF	lung
5	chr3:157019200-157023000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:157019200-157028200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:157019200-157028400	Weak transcription	Osteobl	bone
8	chr3:157019400-157022000	Weak transcription	NHDF-Ad	bronchial
9	chr3:157019400-157028200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:157020200-157021600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:157020600-157022200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:157021000-157021800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:157021000-157021800	Enhancers	Fetal Brain Male	brain
14	chr3:157021200-157021600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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