Variant report

Variant	rs1566521
Chromosome Location	chr3:157033291-157033292
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10936077	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10936079	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12486155	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12486955	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12490120	0.82[EUR][1000 genomes]
rs12494423	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12633099	0.81[EUR][1000 genomes]
rs12636252	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1392798	0.82[CHB][hapmap];0.90[JPT][hapmap];0.94[YRI][hapmap];0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1403109	0.82[EUR][1000 genomes]
rs1500921	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1500923	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1522393	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1546260	0.82[EUR][1000 genomes]
rs1581413	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34263112	0.98[ASN][1000 genomes]
rs55734537	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62278578	0.83[ASN][1000 genomes]
rs62278580	0.82[ASN][1000 genomes]
rs62281378	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73156724	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73156728	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7642909	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs991083	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3358398	chr3:157030558-157035856	Enhancers Weak transcription Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157015600-157048400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:157021800-157035400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:157030400-157036200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:157030600-157035400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:157030600-157035400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:157030600-157035400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr3:157030600-157035400	Weak transcription	NHDF-Ad	bronchial
8	chr3:157030600-157035400	Weak transcription	NHLF	lung
9	chr3:157030600-157047000	Weak transcription	Osteobl	bone
10	chr3:157031400-157037400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:157031800-157035600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:157031800-157039200	Weak transcription	HUVEC	blood vessel

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