Variant report

Variant	rs62281378
Chromosome Location	chr3:157027632-157027633
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10936077	0.81[EUR][1000 genomes]
rs10936079	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12486155	0.82[EUR][1000 genomes]
rs12486955	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12494423	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12636252	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1500923	0.91[EUR][1000 genomes]
rs1522393	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1566521	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1581413	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34263112	0.86[ASN][1000 genomes]
rs73156724	0.81[EUR][1000 genomes]
rs73156728	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7642909	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs991083	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157004800-157028200	Weak transcription	HUVEC	blood vessel
2	chr3:157013000-157032600	Weak transcription	NH-A	brain
3	chr3:157015600-157048400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:157019000-157029000	Weak transcription	NHLF	lung
5	chr3:157019200-157028200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:157019200-157028400	Weak transcription	Osteobl	bone
7	chr3:157019400-157028200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr3:157021800-157035400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:157023800-157028200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:157024000-157028400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:157024200-157028600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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