Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156951228..156953656-chr3:157037881..157040326,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10936077	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10936079	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12486155	0.81[EUR][1000 genomes]
rs12486955	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12494423	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12636252	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1392798	0.83[ASN][1000 genomes]
rs1500921	0.83[ASN][1000 genomes]
rs1500923	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1522393	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1566521	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1581413	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34263112	0.86[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs55734537	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62278578	0.83[ASN][1000 genomes]
rs62278580	0.82[ASN][1000 genomes]
rs62281378	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73156724	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73156728	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7642909	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157015600-157048400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:157030600-157047000	Weak transcription	Osteobl	bone
3	chr3:157031800-157039200	Weak transcription	HUVEC	blood vessel
4	chr3:157036000-157047800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:157036200-157039000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:157036200-157040400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:157036800-157053000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:157038000-157038200	Enhancers	Fetal Lung	lung

Quick Search: