Variant report

Variant	rs62278578
Chromosome Location	chr3:157055867-157055868
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10936079	0.83[ASN][1000 genomes]
rs12486955	0.83[ASN][1000 genomes]
rs12494423	0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs12636252	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1392798	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1500921	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1500923	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1522393	0.83[ASN][1000 genomes]
rs1566521	0.83[ASN][1000 genomes]
rs1581413	0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs34263112	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56311637	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62278580	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73156728	0.81[ASN][1000 genomes]
rs7642909	0.83[ASN][1000 genomes]
rs991083	0.83[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157041000-157065600	Weak transcription	Pancreas	Pancrea
2	chr3:157048200-157057000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:157051000-157056200	Enhancers	HUVEC	blood vessel
4	chr3:157054400-157056600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:157054400-157057200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:157054400-157058000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:157054600-157056200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:157054600-157056600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:157054600-157056600	Weak transcription	NHDF-Ad	bronchial
10	chr3:157054600-157056800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:157054600-157057000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:157054800-157065200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:157055400-157057200	Weak transcription	A549	lung
14	chr3:157055800-157065600	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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