Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10936077	0.81[EUR][1000 genomes]
rs10936079	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12486155	0.82[EUR][1000 genomes]
rs12486955	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12494423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1392798	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1500921	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1500923	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1522393	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1566521	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1581413	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34263112	0.82[ASN][1000 genomes]
rs55734537	0.83[EUR][1000 genomes]
rs56311637	0.89[ASN][1000 genomes]
rs62278578	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs62278580	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs62281378	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73156724	0.81[EUR][1000 genomes]
rs73156728	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7642909	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs991083	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157015600-157048400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:157030600-157047000	Weak transcription	Osteobl	bone
3	chr3:157036000-157047800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:157036800-157053000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:157039800-157051000	Weak transcription	HUVEC	blood vessel
6	chr3:157041000-157065600	Weak transcription	Pancreas	Pancrea
7	chr3:157043400-157044000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin

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