Variant report

Variant	rs12496269
Chromosome Location	chr3:157087284-157087285
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10513508	0.91[ASN][1000 genomes]
rs10513509	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10513510	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10513512	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10804778	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10936078	0.91[ASN][1000 genomes]
rs10936080	0.91[ASN][1000 genomes]
rs10936081	0.91[ASN][1000 genomes]
rs10936083	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11918974	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12490192	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12494465	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12495519	0.84[ASN][1000 genomes]
rs12634054	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12634689	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12635316	0.91[ASN][1000 genomes]
rs12637476	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1474281	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1500917	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1500918	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1500922	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1500924	0.85[ASN][1000 genomes]
rs1522392	0.91[ASN][1000 genomes]
rs1587533	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16827483	0.91[ASN][1000 genomes]
rs16827516	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16827530	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1875315	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2047648	0.91[ASN][1000 genomes]
rs2047650	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2173824	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4680354	0.91[ASN][1000 genomes]
rs55865575	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56143236	0.86[ASN][1000 genomes]
rs56313302	0.91[ASN][1000 genomes]
rs62278575	0.91[ASN][1000 genomes]
rs62278582	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62278583	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62278584	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62278585	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62278586	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62278596	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62278597	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62278598	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62278601	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62278603	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62281377	0.91[ASN][1000 genomes]
rs62281379	0.91[ASN][1000 genomes]
rs62281383	0.91[ASN][1000 genomes]
rs6799567	0.80[ASN][1000 genomes]
rs73156752	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73156753	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73156756	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73156757	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73156759	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7631257	0.91[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157078200-157102400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:157078800-157091600	Weak transcription	NH-A	brain
3	chr3:157079200-157087600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:157081600-157091600	Weak transcription	NHLF	lung
5	chr3:157081600-157093800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:157083600-157105800	Weak transcription	HSMM	muscle
7	chr3:157083800-157087800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr3:157083800-157092800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:157083800-157093600	Weak transcription	Fetal Brain Male	brain
10	chr3:157085000-157091600	Weak transcription	Aorta	Aorta
11	chr3:157086000-157087400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:157086200-157087800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:157086200-157091600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr3:157086400-157090200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:157086800-157087400	Enhancers	Pancreas	Pancrea
16	chr3:157086800-157089200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:157086800-157089200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:157086800-157089200	Enhancers	Fetal Lung	lung
19	chr3:157087000-157087800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:157087000-157087800	Enhancers	A549	lung
21	chr3:157087000-157088400	Enhancers	HUVEC	blood vessel
22	chr3:157087000-157089000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:157087000-157089400	Enhancers	NHDF-Ad	bronchial
24	chr3:157087000-157089400	Enhancers	Osteobl	bone
25	chr3:157087200-157087400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:157087200-157088200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr3:157087200-157088400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr3:157087200-157088400	Enhancers	Adipose Nuclei	Adipose
29	chr3:157087200-157089000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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