Variant report

Variant	rs1875315
Chromosome Location	chr3:157057541-157057542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10460861	0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10513508	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10513509	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10513510	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10513512	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10804778	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10936078	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10936080	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10936081	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10936083	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11918974	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12490192	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12494465	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12495519	0.91[ASN][1000 genomes]
rs12496269	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12634054	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12634689	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12635316	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12637476	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1403108	0.86[ASN][1000 genomes]
rs1474281	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1500917	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1500918	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1500922	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1500924	0.92[ASN][1000 genomes]
rs1522392	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1568611	0.86[ASN][1000 genomes]
rs1587533	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16827483	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs16827516	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16827530	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2047648	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2047650	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2173824	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2321742	0.85[ASN][1000 genomes]
rs4680354	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs55865575	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56143236	0.93[ASN][1000 genomes]
rs56313302	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs62278575	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs62278582	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62278583	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62278584	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62278585	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62278586	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62278596	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62278597	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62278598	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62278601	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62278603	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62281377	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs62281379	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs62281383	0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6799567	0.88[ASN][1000 genomes]
rs73156752	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73156753	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73156756	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73156757	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73156759	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7631257	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7649737	0.85[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157041000-157065600	Weak transcription	Pancreas	Pancrea
2	chr3:157054400-157058000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:157054800-157065200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:157055800-157065600	Weak transcription	Osteobl	bone
5	chr3:157056200-157072600	Weak transcription	HUVEC	blood vessel
6	chr3:157056600-157057800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:157057000-157072800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr3:157057200-157057600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:157057200-157057600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:157057200-157057600	Enhancers	A549	lung
11	chr3:157057400-157065200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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