Variant report

Variant	rs1587533
Chromosome Location	chr3:157083752-157083753
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10460861	0.89[ASN][1000 genomes]
rs10513509	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10513510	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10513512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10804778	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10936083	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11918974	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12490192	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12494465	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12496269	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12634054	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12634689	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12637476	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1474281	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1500917	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1500918	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1500922	0.95[EUR][1000 genomes]
rs16827516	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16827530	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1875315	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2047650	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2173824	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55865575	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62278582	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62278583	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62278584	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62278585	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62278586	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62278596	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62278597	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62278598	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62278601	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62278603	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73156752	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73156753	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73156756	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73156757	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73156759	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157066000-157086800	Weak transcription	Pancreas	Pancrea
2	chr3:157078200-157102400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr3:157078600-157083800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr3:157078800-157091600	Weak transcription	NH-A	brain
5	chr3:157079200-157087600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr3:157081600-157091600	Weak transcription	NHLF	lung
7	chr3:157081600-157093800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr3:157082200-157083800	Enhancers	NHDF-Ad	bronchial
9	chr3:157082400-157084600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:157082800-157084000	Enhancers	HUVEC	blood vessel
11	chr3:157083000-157083800	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr3:157083200-157083800	Enhancers	Fetal Lung	lung
13	chr3:157083200-157084000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:157083200-157084000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:157083200-157084200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:157083200-157084200	Enhancers	Osteobl	bone
17	chr3:157083200-157084800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr3:157083400-157084200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr3:157083600-157083800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:157083600-157083800	Enhancers	Fetal Brain Male	brain
21	chr3:157083600-157086800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:157083600-157086800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr3:157083600-157087000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr3:157083600-157087000	Weak transcription	A549	lung
25	chr3:157083600-157105800	Weak transcription	HSMM	muscle

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