Variant report

Variant	rs12632525
Chromosome Location	chr3:157009732-157009733
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:157008081..157011337-chr3:157013720..157016384,3	K562	blood:
2	chr3:157007024..157009748-chr3:157011757..157013274,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10460861	0.85[EUR][1000 genomes]
rs10513508	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10936074	0.86[ASN][1000 genomes]
rs10936075	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10936078	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10936080	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10936081	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12489453	0.85[ASN][1000 genomes]
rs12489799	0.85[ASN][1000 genomes]
rs12495519	0.85[EUR][1000 genomes]
rs12496051	0.85[ASN][1000 genomes]
rs12629589	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12632562	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12633429	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12635316	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1403106	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1403108	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1500924	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1522392	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1568611	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16827318	0.85[ASN][1000 genomes]
rs16827352	0.86[ASN][1000 genomes]
rs16827483	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2047648	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2321742	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2874616	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35910014	0.85[ASN][1000 genomes]
rs4679788	0.85[ASN][1000 genomes]
rs4679789	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4680349	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4680352	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4680354	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55949516	0.81[ASN][1000 genomes]
rs56143236	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56150358	0.82[EUR][1000 genomes]
rs56313302	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59279023	0.85[ASN][1000 genomes]
rs62276501	0.85[ASN][1000 genomes]
rs62276502	0.85[ASN][1000 genomes]
rs62276504	0.85[ASN][1000 genomes]
rs62276505	0.85[ASN][1000 genomes]
rs62278575	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62281377	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62281379	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62281383	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6768074	0.86[ASN][1000 genomes]
rs6780205	0.86[ASN][1000 genomes]
rs6799567	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73154657	0.81[ASN][1000 genomes]
rs73154659	0.85[ASN][1000 genomes]
rs73154671	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73154682	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7610214	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7619892	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7626589	0.85[ASN][1000 genomes]
rs7631257	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7648599	0.85[ASN][1000 genomes]
rs7649737	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7652298	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs924516	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs949854	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157000600-157015400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:157003600-157011800	Weak transcription	Fetal Lung	lung
3	chr3:157004800-157028200	Weak transcription	HUVEC	blood vessel
4	chr3:157005600-157010400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:157005600-157015000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:157006000-157011800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:157007000-157010400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:157007200-157010200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:157007400-157010200	Enhancers	NHLF	lung
10	chr3:157007600-157010200	Enhancers	HSMM	muscle
11	chr3:157007600-157012200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:157008000-157009800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:157008400-157009800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr3:157008400-157010400	Enhancers	NHDF-Ad	bronchial
15	chr3:157009000-157012200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:157009000-157012400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr3:157009200-157012000	Weak transcription	HSMMtube	muscle
18	chr3:157009200-157012200	Weak transcription	NH-A	brain
19	chr3:157009400-157011200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr3:157009600-157010800	Weak transcription	Osteobl	bone
21	chr3:157009600-157011000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:157009600-157011000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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