Variant report

Variant	rs4679789
Chromosome Location	chr3:156997652-156997653
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156997473..157000192-chr3:157001265..157003413,2	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10460861	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10513508	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10755111	0.84[ASN][1000 genomes]
rs10936074	0.82[EUR][1000 genomes]
rs10936075	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10936078	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10936080	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10936081	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12489453	0.81[EUR][1000 genomes]
rs12489799	0.81[EUR][1000 genomes]
rs12495519	0.81[EUR][1000 genomes]
rs12496051	0.81[EUR][1000 genomes]
rs12629589	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12632525	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12632562	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12633429	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12635316	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1403105	0.84[ASN][1000 genomes]
rs1403106	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1403108	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1500924	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1522392	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1568611	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16827318	0.81[EUR][1000 genomes]
rs16827352	0.82[EUR][1000 genomes]
rs16827483	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2047648	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2321742	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2321743	0.84[ASN][1000 genomes]
rs2874616	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35910014	0.81[EUR][1000 genomes]
rs4679788	0.81[EUR][1000 genomes]
rs4679790	0.85[ASN][1000 genomes]
rs4679791	0.84[ASN][1000 genomes]
rs4680349	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4680352	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4680353	0.85[ASN][1000 genomes]
rs4680354	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56143236	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56150358	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56313302	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59279023	0.82[EUR][1000 genomes]
rs62276501	0.81[EUR][1000 genomes]
rs62276502	0.81[EUR][1000 genomes]
rs62276504	0.81[EUR][1000 genomes]
rs62276505	0.82[EUR][1000 genomes]
rs62278575	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62281377	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62281379	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62281383	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6768074	0.82[EUR][1000 genomes]
rs6780205	0.82[EUR][1000 genomes]
rs6799567	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73154659	0.81[EUR][1000 genomes]
rs73154671	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73154682	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7610214	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7619892	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7626589	0.81[EUR][1000 genomes]
rs7631257	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7648599	0.81[EUR][1000 genomes]
rs7649737	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7652298	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs924516	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs949854	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156967200-157000000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:156967200-157000000	Weak transcription	NH-A	brain
3	chr3:156967200-157007800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:156984200-156998200	Weak transcription	HUVEC	blood vessel
5	chr3:156988000-157005800	Weak transcription	Pancreas	Pancrea
6	chr3:156989400-156999800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:156992600-157000200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:156994000-157000000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:156994200-156998800	Weak transcription	HSMM	muscle
10	chr3:156994400-156998000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:156994400-156998000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:156994400-156998000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr3:156994600-156998600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:156997000-157000400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:156997000-157001000	Enhancers	Osteobl	bone
16	chr3:156997000-157004400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:156997400-156997800	Weak transcription	NHDF-Ad	bronchial
18	chr3:156997400-156998400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr3:156997400-156999600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr3:156997600-157003600	Weak transcription	K562	blood

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