Variant report

Variant	rs10936075
Chromosome Location	chr3:156991714-156991715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 140 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:138)

rs_ID	r²[population]
rs10460861	0.88[AMR][1000 genomes]
rs10513508	0.83[AMR][1000 genomes]
rs10755111	0.83[ASN][1000 genomes]
rs10936061	0.81[EUR][1000 genomes]
rs10936062	0.81[EUR][1000 genomes]
rs10936063	0.80[EUR][1000 genomes]
rs10936064	0.80[EUR][1000 genomes]
rs10936065	0.80[EUR][1000 genomes]
rs10936066	0.80[EUR][1000 genomes]
rs10936067	0.84[EUR][1000 genomes]
rs10936068	0.84[EUR][1000 genomes]
rs10936069	0.84[EUR][1000 genomes]
rs10936074	0.89[EUR][1000 genomes]
rs10936078	0.83[AMR][1000 genomes]
rs10936080	0.83[AMR][1000 genomes]
rs10936081	0.83[AMR][1000 genomes]
rs12488480	0.82[EUR][1000 genomes]
rs12489453	0.88[EUR][1000 genomes]
rs12489799	0.86[EUR][1000 genomes]
rs12490836	0.85[EUR][1000 genomes]
rs12492801	0.81[EUR][1000 genomes]
rs12493531	0.82[AMR][1000 genomes]
rs12496051	0.88[EUR][1000 genomes]
rs12496111	0.84[EUR][1000 genomes]
rs12497891	0.82[EUR][1000 genomes]
rs12629589	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12630209	0.80[EUR][1000 genomes]
rs12632525	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12632562	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12633429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12634818	0.84[EUR][1000 genomes]
rs12635088	0.81[EUR][1000 genomes]
rs12635316	0.83[AMR][1000 genomes]
rs1403105	0.83[ASN][1000 genomes]
rs1403106	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1403108	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1500924	0.83[AMR][1000 genomes]
rs1522392	0.83[AMR][1000 genomes]
rs1568611	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16827318	0.88[EUR][1000 genomes]
rs16827352	0.89[EUR][1000 genomes]
rs16827483	0.83[AMR][1000 genomes]
rs17552941	0.81[EUR][1000 genomes]
rs1995304	0.84[EUR][1000 genomes]
rs2047648	0.83[AMR][1000 genomes]
rs2321742	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2321743	0.83[ASN][1000 genomes]
rs2874616	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35910014	0.88[EUR][1000 genomes]
rs3935750	0.82[EUR][1000 genomes]
rs41272613	0.81[EUR][1000 genomes]
rs4383467	0.80[EUR][1000 genomes]
rs4413278	0.82[EUR][1000 genomes]
rs4608646	0.80[EUR][1000 genomes]
rs4679788	0.88[EUR][1000 genomes]
rs4679789	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4679790	0.84[ASN][1000 genomes]
rs4679791	0.83[ASN][1000 genomes]
rs4680343	0.82[EUR][1000 genomes]
rs4680345	0.82[EUR][1000 genomes]
rs4680349	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4680352	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4680353	0.84[ASN][1000 genomes]
rs4680354	0.83[AMR][1000 genomes]
rs5003893	0.81[EUR][1000 genomes]
rs55828309	0.82[EUR][1000 genomes]
rs55835412	0.84[EUR][1000 genomes]
rs55949516	0.85[EUR][1000 genomes]
rs55953639	0.84[EUR][1000 genomes]
rs56078410	0.84[EUR][1000 genomes]
rs56143236	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56150358	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56263456	0.84[EUR][1000 genomes]
rs56313302	0.83[AMR][1000 genomes]
rs57322659	0.84[EUR][1000 genomes]
rs57511361	0.84[EUR][1000 genomes]
rs59279023	0.89[EUR][1000 genomes]
rs59485606	0.82[EUR][1000 genomes]
rs60153077	0.84[EUR][1000 genomes]
rs61149035	0.82[EUR][1000 genomes]
rs62274155	0.80[EUR][1000 genomes]
rs62274156	0.80[EUR][1000 genomes]
rs62274159	0.82[EUR][1000 genomes]
rs62276460	0.82[EUR][1000 genomes]
rs62276461	0.82[EUR][1000 genomes]
rs62276462	0.82[EUR][1000 genomes]
rs62276465	0.83[EUR][1000 genomes]
rs62276470	0.84[EUR][1000 genomes]
rs62276471	0.84[EUR][1000 genomes]
rs62276474	0.84[EUR][1000 genomes]
rs62276475	0.84[EUR][1000 genomes]
rs62276479	0.84[EUR][1000 genomes]
rs62276480	0.85[EUR][1000 genomes]
rs62276489	0.84[EUR][1000 genomes]
rs62276490	0.84[EUR][1000 genomes]
rs62276491	0.84[EUR][1000 genomes]
rs62276495	0.84[EUR][1000 genomes]
rs62276496	0.84[EUR][1000 genomes]
rs62276497	0.82[EUR][1000 genomes]
rs62276501	0.86[EUR][1000 genomes]
rs62276502	0.86[EUR][1000 genomes]
rs62276504	0.88[EUR][1000 genomes]
rs62276505	0.89[EUR][1000 genomes]
rs62276528	0.82[AMR][1000 genomes]
rs62278575	0.83[AMR][1000 genomes]
rs62281377	0.83[AMR][1000 genomes]
rs62281379	0.83[AMR][1000 genomes]
rs62281383	0.83[AMR][1000 genomes]
rs6441115	0.81[EUR][1000 genomes]
rs6441116	0.81[EUR][1000 genomes]
rs6441119	0.82[EUR][1000 genomes]
rs6768052	0.84[EUR][1000 genomes]
rs6768074	0.89[EUR][1000 genomes]
rs6780205	0.89[EUR][1000 genomes]
rs6781682	0.82[EUR][1000 genomes]
rs6792479	0.84[EUR][1000 genomes]
rs6799567	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6805989	0.82[EUR][1000 genomes]
rs6806232	0.82[EUR][1000 genomes]
rs73154649	0.84[EUR][1000 genomes]
rs73154657	0.85[EUR][1000 genomes]
rs73154659	0.88[EUR][1000 genomes]
rs73154671	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73154682	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73873800	0.83[EUR][1000 genomes]
rs7610214	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7619892	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7621912	0.82[EUR][1000 genomes]
rs7626589	0.86[EUR][1000 genomes]
rs7631257	0.83[AMR][1000 genomes]
rs7633004	0.81[EUR][1000 genomes]
rs7648599	0.86[EUR][1000 genomes]
rs7649737	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7652298	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8180056	0.81[EUR][1000 genomes]
rs8180057	0.82[EUR][1000 genomes]
rs924516	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs949854	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156967200-157000000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:156967200-157000000	Weak transcription	NH-A	brain
3	chr3:156967200-157007800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:156979600-156997000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:156982400-156992800	Weak transcription	Osteobl	bone
6	chr3:156982400-156997000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:156984200-156998200	Weak transcription	HUVEC	blood vessel
8	chr3:156988000-157005800	Weak transcription	Pancreas	Pancrea
9	chr3:156989400-156999800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:156989600-156991800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:156990600-156991800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:156990600-156992000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:156990600-156993800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr3:156990800-156994600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr3:156991000-156992000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr3:156991000-156992000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr3:156991000-156993000	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr3:156991000-156993200	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr3:156991000-156994200	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr3:156991000-156994600	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr3:156991200-156992000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr3:156991200-156993000	Enhancers	H9 Cell Line	embryonic stem cell
23	chr3:156991200-156994600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:156991400-156992200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr3:156991400-156992200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr3:156991600-156992400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr3:156991600-156992800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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