Variant report

Variant	rs6788214
Chromosome Location	chr3:156987807-156987808
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10513508	0.88[CEU][hapmap]
rs10936063	1.00[CEU][hapmap]
rs10936066	1.00[CEU][hapmap]
rs10936078	0.86[CEU][hapmap]
rs10936080	0.89[CEU][hapmap]
rs10936081	0.89[CEU][hapmap]
rs1157738	0.83[CEU][hapmap]
rs12488480	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs12492801	1.00[CEU][hapmap]
rs12496111	1.00[CEU][hapmap]
rs12632562	1.00[CEU][hapmap]
rs12633429	1.00[CEU][hapmap]
rs1403104	0.84[CEU][hapmap]
rs1403106	1.00[CEU][hapmap]
rs1403108	0.88[CEU][hapmap]
rs1500924	0.89[CEU][hapmap]
rs1522392	0.88[CEU][hapmap]
rs1568611	0.88[CEU][hapmap]
rs16827308	0.84[CEU][hapmap]
rs16827322	0.84[CEU][hapmap]
rs1995304	1.00[CEU][hapmap]
rs2047648	0.83[CEU][hapmap]
rs2874616	1.00[CEU][hapmap]
rs3935750	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs4679788	1.00[CEU][hapmap]
rs4680340	1.00[CEU][hapmap]
rs4680343	1.00[CEU][hapmap]
rs4680345	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs4680347	0.84[CEU][hapmap]
rs4680352	1.00[CEU][hapmap]
rs4680354	0.88[CEU][hapmap]
rs5003893	1.00[CEU][hapmap]
rs6441115	1.00[CEU][hapmap]
rs6441116	1.00[CEU][hapmap]
rs6768074	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs6781682	0.94[CEU][hapmap]
rs6799567	0.88[CEU][hapmap]
rs6805989	1.00[CEU][hapmap]
rs6809307	1.00[CEU][hapmap]
rs7621912	1.00[CEU][hapmap]
rs7631257	0.89[CEU][hapmap]
rs7648599	1.00[CEU][hapmap]
rs7649737	0.89[CEU][hapmap]
rs7652298	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs8925	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156967200-156989000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:156967200-157000000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:156967200-157000000	Weak transcription	NH-A	brain
4	chr3:156967200-157007800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:156979600-156997000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:156981200-156991400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:156981600-156991000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:156982400-156992800	Weak transcription	Osteobl	bone
9	chr3:156982400-156997000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:156984200-156998200	Weak transcription	HUVEC	blood vessel
11	chr3:156987600-156989200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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