Variant report
| Variant | rs2873357 |
|---|---|
| Chromosome Location | chr1:104789453-104789454 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11185410 | 0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12129522 | 0.86[AFR][1000 genomes] |
| rs12130258 | 0.86[AFR][1000 genomes] |
| rs12133443 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12406466 | 0.88[AFR][1000 genomes] |
| rs12406661 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12407649 | 0.85[ASN][1000 genomes] |
| rs1497679 | 0.86[AFR][1000 genomes] |
| rs2209954 | 0.81[AFR][1000 genomes] |
| rs2317080 | 0.88[AFR][1000 genomes] |
| rs2317081 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4325136 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4571975 | 0.86[AFR][1000 genomes] |
| rs5001661 | 0.86[AFR][1000 genomes] |
| rs56868860 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6586449 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6586450 | 0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6667359 | 0.88[AFR][1000 genomes] |
| rs6675138 | 0.84[AFR][1000 genomes] |
| rs6675141 | 0.86[AFR][1000 genomes] |
| rs967982 | 0.87[AMR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv872072 | chr1:104470622-105076810 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1010903 | chr1:104483363-105468941 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:104775600-104790200 | Weak transcription | Fetal Heart | heart |
