Variant report

Variant	rs12406466
Chromosome Location	chr1:104788814-104788815
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10158447	0.85[ASN][1000 genomes]
rs11185403	0.85[ASN][1000 genomes]
rs11185404	0.83[ASN][1000 genomes]
rs11185405	0.85[ASN][1000 genomes]
rs11185406	0.84[ASN][1000 genomes]
rs12026506	0.82[ASN][1000 genomes]
rs12121548	0.85[ASN][1000 genomes]
rs12126550	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12129522	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12129901	0.85[ASN][1000 genomes]
rs12130258	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12133443	0.88[AFR][1000 genomes]
rs1497679	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1497680	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1887907	0.85[ASN][1000 genomes]
rs1928305	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1928306	0.85[ASN][1000 genomes]
rs1928317	0.85[ASN][1000 genomes]
rs1928318	0.85[ASN][1000 genomes]
rs1928319	0.85[ASN][1000 genomes]
rs1928320	0.85[ASN][1000 genomes]
rs1928322	0.83[ASN][1000 genomes]
rs1928323	0.85[ASN][1000 genomes]
rs1928324	0.85[ASN][1000 genomes]
rs1928325	0.85[ASN][1000 genomes]
rs1928326	0.84[ASN][1000 genomes]
rs1928327	0.84[ASN][1000 genomes]
rs2209954	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2225250	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2317080	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2317081	0.88[AFR][1000 genomes]
rs2873357	0.88[AFR][1000 genomes]
rs35094251	0.82[ASN][1000 genomes]
rs3866247	0.85[ASN][1000 genomes]
rs3897240	0.85[ASN][1000 genomes]
rs4325136	0.88[AFR][1000 genomes]
rs4571975	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5001661	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6586447	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6586450	0.86[AFR][1000 genomes]
rs6659163	0.82[ASN][1000 genomes]
rs6667359	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6675138	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6675141	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6683449	0.85[ASN][1000 genomes]
rs6683559	0.85[ASN][1000 genomes]
rs6690531	0.85[ASN][1000 genomes]
rs6692944	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6698522	0.85[ASN][1000 genomes]
rs6700312	0.82[ASN][1000 genomes]
rs6703626	0.85[ASN][1000 genomes]
rs7412375	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7538302	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7547425	0.85[ASN][1000 genomes]
rs7548005	0.85[ASN][1000 genomes]
rs7550688	0.84[ASN][1000 genomes]
rs949926	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872072	chr1:104470622-105076810	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1010903	chr1:104483363-105468941	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:104775600-104790200	Weak transcription	Fetal Heart	heart
2	chr1:104788000-104789400	Weak transcription	Fetal Lung	lung

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