Variant report

Variant	rs28734976
Chromosome Location	chr4:86853862-86853863
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86853756..86855558-chr4:86856892..86859472,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10004914	1.00[AMR][1000 genomes]
rs10017673	1.00[AMR][1000 genomes]
rs10018270	1.00[AMR][1000 genomes]
rs10024305	1.00[AMR][1000 genomes]
rs11941635	1.00[AMR][1000 genomes]
rs13110649	1.00[AMR][1000 genomes]
rs28384086	1.00[AMR][1000 genomes]
rs28397866	1.00[AMR][1000 genomes]
rs28413133	1.00[AMR][1000 genomes]
rs28421282	1.00[AMR][1000 genomes]
rs28478283	1.00[AMR][1000 genomes]
rs28481580	1.00[AMR][1000 genomes]
rs28482943	1.00[AMR][1000 genomes]
rs28503231	1.00[AMR][1000 genomes]
rs28510473	1.00[AMR][1000 genomes]
rs28528165	1.00[AMR][1000 genomes]
rs28582783	1.00[AMR][1000 genomes]
rs28625743	1.00[AMR][1000 genomes]
rs28646131	1.00[AMR][1000 genomes]
rs28655099	1.00[AMR][1000 genomes]
rs4693125	1.00[AMR][1000 genomes]
rs7674538	1.00[AMR][1000 genomes]
rs7682809	1.00[AMR][1000 genomes]
rs9997347	1.00[AMR][1000 genomes]
rs9999508	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879519	chr4:86786204-86871282	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv879520	chr4:86829529-86918232	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86848600-86856000	Weak transcription	Primary B cells from cord blood	blood
2	chr4:86850400-86854400	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr4:86850800-86854000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:86850800-86854200	Active TSS	Fetal Kidney	kidney
5	chr4:86851200-86863200	Weak transcription	Psoas Muscle	Psoas
6	chr4:86851400-86854400	Weak transcription	Spleen	Spleen
7	chr4:86851400-86861600	Weak transcription	Primary B cells from peripheral blood	blood
8	chr4:86851400-86865800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr4:86851400-86874600	Weak transcription	HSMMtube	muscle
10	chr4:86851600-86854000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr4:86851600-86854000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr4:86851600-86854600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr4:86851600-86858200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr4:86851600-86870000	Weak transcription	HSMM	muscle
15	chr4:86851600-86874800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr4:86851800-86854200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr4:86851800-86854200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr4:86852200-86855400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr4:86852600-86854600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:86853000-86854400	Enhancers	Fetal Heart	heart
21	chr4:86853000-86855400	Enhancers	Liver	Liver
22	chr4:86853200-86854000	Active TSS	Duodenum Mucosa	Duodenum
23	chr4:86853200-86854200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr4:86853200-86854600	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr4:86853400-86854000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr4:86853400-86854000	Enhancers	Fetal Lung	lung
27	chr4:86853400-86854200	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr4:86853400-86854200	Enhancers	Left Ventricle	heart
29	chr4:86853400-86854400	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr4:86853400-86854800	Enhancers	Fetal Thymus	thymus
31	chr4:86853600-86854000	Active TSS	Brain Germinal Matrix	brain
32	chr4:86853600-86854000	Flanking Active TSS	Brain Hippocampus Middle	brain
33	chr4:86853600-86854000	Flanking Active TSS	Brain Substantia Nigra	brain
34	chr4:86853600-86854000	Flanking Active TSS	Fetal Stomach	stomach
35	chr4:86853600-86854000	Active TSS	Stomach Mucosa	stomach
36	chr4:86853600-86854000	Flanking Active TSS	A549	lung
37	chr4:86853600-86854000	Flanking Active TSS	HUVEC	blood vessel
38	chr4:86853600-86854000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
39	chr4:86853600-86854200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr4:86853600-86854200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr4:86853600-86854200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr4:86853600-86854200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr4:86853600-86854200	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr4:86853600-86854200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
45	chr4:86853600-86854200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr4:86853600-86854200	Flanking Active TSS	Adipose Nuclei	Adipose
47	chr4:86853600-86854200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
48	chr4:86853600-86854200	Enhancers	Colonic Mucosa	Colon
49	chr4:86853600-86854200	Active TSS	Duodenum Smooth Muscle	Duodenum
50	chr4:86853600-86854200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland

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