Variant report

Variant	rs28625743
Chromosome Location	chr4:86759311-86759312
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86758093..86760173-chr4:86804562..86807184,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10004914	1.00[AMR][1000 genomes]
rs10017673	1.00[AMR][1000 genomes]
rs10018270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10024305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11097067	1.00[AMR][1000 genomes]
rs11941635	1.00[AMR][1000 genomes]
rs13110649	1.00[AMR][1000 genomes]
rs1482086	1.00[AMR][1000 genomes]
rs189357	1.00[AMR][1000 genomes]
rs28384086	1.00[AMR][1000 genomes]
rs28397866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28413133	1.00[AMR][1000 genomes]
rs28421282	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28478283	1.00[AMR][1000 genomes]
rs28481580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28482943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28503231	1.00[AMR][1000 genomes]
rs28510473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28528165	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28582783	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28646131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28655099	1.00[AMR][1000 genomes]
rs28734976	1.00[AMR][1000 genomes]
rs28809183	1.00[AMR][1000 genomes]
rs28843174	1.00[AMR][1000 genomes]
rs343857	1.00[AMR][1000 genomes]
rs343858	1.00[AMR][1000 genomes]
rs343861	1.00[AMR][1000 genomes]
rs343862	1.00[AMR][1000 genomes]
rs343863	1.00[AMR][1000 genomes]
rs343865	1.00[AMR][1000 genomes]
rs4315779	1.00[AMR][1000 genomes]
rs4343717	1.00[AMR][1000 genomes]
rs4362811	1.00[AMR][1000 genomes]
rs4693125	1.00[AMR][1000 genomes]
rs6531853	1.00[AMR][1000 genomes]
rs6531855	1.00[AMR][1000 genomes]
rs6531857	1.00[AMR][1000 genomes]
rs6531858	1.00[AMR][1000 genomes]
rs6531859	1.00[AMR][1000 genomes]
rs6531860	1.00[AMR][1000 genomes]
rs6829248	1.00[AMR][1000 genomes]
rs7376882	1.00[AMR][1000 genomes]
rs7659017	1.00[AMR][1000 genomes]
rs7674538	1.00[AMR][1000 genomes]
rs7682809	1.00[AMR][1000 genomes]
rs9997347	1.00[AMR][1000 genomes]
rs9999508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv879518	chr4:86739805-86778943	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv470049	chr4:86750699-86776488	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86737600-86763200	Weak transcription	Primary B cells from cord blood	blood
2	chr4:86749400-86761600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:86749400-86787600	Weak transcription	Pancreas	Pancrea
4	chr4:86749600-86761200	Weak transcription	Ovary	ovary
5	chr4:86749600-86763600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr4:86750000-86809200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr4:86751200-86761400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:86751800-86761600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr4:86753200-86761200	Weak transcription	Stomach Mucosa	stomach
10	chr4:86754800-86761200	Weak transcription	HUVEC	blood vessel
11	chr4:86754800-86761400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr4:86757200-86759600	Enhancers	Fetal Kidney	kidney
13	chr4:86757200-86760200	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr4:86757400-86759400	Enhancers	Adipose Nuclei	Adipose
15	chr4:86758000-86763600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr4:86758200-86759400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr4:86758200-86760000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr4:86758400-86761400	Weak transcription	HSMM	muscle
19	chr4:86758600-86759400	Enhancers	HSMMtube	muscle
20	chr4:86758600-86763800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr4:86759000-86761200	Weak transcription	Fetal Muscle Leg	muscle
22	chr4:86759000-86762400	Weak transcription	Primary B cells from peripheral blood	blood
23	chr4:86759000-86763400	Weak transcription	NHLF	lung
24	chr4:86759000-86763400	Weak transcription	Osteobl	bone
25	chr4:86759200-86759400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr4:86759200-86759400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr4:86759200-86759400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr4:86759200-86759400	Enhancers	NHDF-Ad	bronchial
29	chr4:86759200-86761400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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